EMPIAR-10408 - Single particle cryo-EM dataset of mouse heavy chain apoferritin collected on cryoARM300 [3487 multi-frame micrographs composed of 80 frames each in MRC format]

EMPIAR-10408

Single particle cryo-EM dataset of mouse heavy chain apoferritin collected on cryoARM300 [3487 multi-frame micrographs composed of 80 frames each in MRC format]

Publication:

Assessing the JEOL CRYO ARM 300 for high-throughput automated single-particle cryo-EM in a multiuser environment

Fislage M, Shkumatov A, Stroobants AV, Efremov RG

IUCrJ 7 (2020) 707-718

PMID: 32695417

DOI: 10.1107/s2052252520006065

Related EMDB entry:

EMD-10675

Deposited:

2020-04-22

Released:

2020-12-09

Last modified:

2020-12-09

Imageset size:

486.67 GB

Imageset DOI:

10.6019/EMPIAR-10408

Experimental metadata:

Download xml json

Contains:

micrographs - multiframe

Image Sets

1. raw uncorrected multiframe micrographs of mouse heavy chain apoferritin

Category:

micrographs - multiframe

Image format:

MRC

No. of images or tilt series:

3487

Image size:

(3838, 3710)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(0.603, 0.603)

Details:

dataset of mouse heavy chain apoferritin collected on cryoARM300. 80 frames 0.1s exposure per frame, 0.6e/Å2. Data are in tif format, not gain corrected.
The gain reference file is CountRef_20190326_ApoFerritin_Au.mrc

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Citations

AlignPCA-2D: PCA-reduced Euclidean vector alignment for 2D classification in cryo-EM.

Ramírez-Aportela E, Zarrabeitia OL, Fonseca YC, Ceska T, Subramaniam S, Carazo JM, Sorzano COS. (2026)

A variational framework with composite sparse regularization for cryo-electron tomography reconstruction.

Yu C, Xu Z, Zeng Q, Wan X, El-Messiry H, Zhang F, Han R. (2026)

Helical reconstruction of amyloids in cryoSPARC.

Schaefer JH, O'Neill RT, Donnelly JP, Powers ET, Kelly JW, Lander GC. (2026)

CryoFSL: an annotation-efficient, few-shot learning framework for robust protein particle picking in cryo-electron microscopy micrographs.

Poudel B, Gyawali R, Dhakal A, Cheng J, Xu D. (2026)

An unattended image-processing pipeline for on-the-fly quality assessment and 3D exploration in cryo-EM.

Marchán Torres D, Conesa P, Garcia A, Iceta M, Broche L, Gragera M, Linares R, Kwong HS, Chichón FJ, Svensson O, Arranz R, Effantin G, Kandiah E, Carazo JM, Sorzano COS. (2026)

prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.

He L, Bartesaghi A. (2026)

CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.

Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)

Unbend, correction of local beam-induced sample motion in cryo-EM images using a 3D spline model.

Kong L, Zottig X, Elferich J, Grigorieff N. (2026)

CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

Chart builder: an interactive tool for user driven data visualization in the electron microscopy data bank.

Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)

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