EMPIAR-10065 - Lambda excision HJ intermediate [stack of 66033 particles in MRC format]

EMPIAR-10065

Lambda excision HJ intermediate [stack of 66033 particles in MRC format]

Publication:

Structure of a Holliday junction complex reveals mechanisms governing a highly regulated DNA transaction

Laxmikanthan G, Xu C, Brilot AF, Warren D, Steele L, Seah N, Tong W, Grigorieff N, Landy A, Van Duyne GD

eLife 5 (2016)

PMID: 27223329

DOI: 10.7554/eLife.14313

Related EMDB entry:

EMD-3400

Deposited:

2016-06-18

Released:

2016-06-20

Last modified:

2016-06-20

Imageset size:

4.04 GB

Imageset DOI:

10.6019/EMPIAR-10065

Experimental metadata:

Download xml json

Contains:

picked particles - multiframe - processed

Image Sets

1. Particle stack and Frealign parameter file

Category:

picked particles - multiframe - processed

Image format:

MRC

No. of images or tilt series:

66033

Image size:

(128, 128)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(2.8, 2.8)

Details:

Particle stack contains images normalized with zero average and constant variance. The particle density is dark on light background. The data were collected on a Falcon II detector mounted on an FEI F30 microscope running at 300 kV. The Frealign parameter file contains the final particle alignments and classification results for the best class that was used to calculate the published 11-Å reconstruction. The table at the end of the parameter file does not contain the final FSC curve; the final FSC curve was calculated using more tightly masked half reconstructions (see related publication).

Files:

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Citations

A variational framework with composite sparse regularization for cryo-electron tomography reconstruction.

Yu C, Xu Z, Zeng Q, Wan X, El-Messiry H, Zhang F, Han R. (2026)

CryoFSL: an annotation-efficient, few-shot learning framework for robust protein particle picking in cryo-electron microscopy micrographs.

Poudel B, Gyawali R, Dhakal A, Cheng J, Xu D. (2026)

CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.

Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)

prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.

He L, Bartesaghi A. (2026)

Unbend, correction of local beam-induced sample motion in cryo-EM images using a 3D spline model.

Kong L, Zottig X, Elferich J, Grigorieff N. (2026)

Chart builder: an interactive tool for user driven data visualization in the electron microscopy data bank.

Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)

CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

Dual site targeting of the bacterial 70S ribosome by tetracyclines.

Devarkar SC, Lomakin IB, Wang J, Grada A, Bunick CG. (2026)

Deep-learning methods for contrast enhancement and artifact reduction in cryo-electron tomography: a systematic analysis of the state of the art and proposed improvements.

Jones HN, Deshmukh A, Pande K. (2026)

CryoGS: High-Quality Cryo-EM Homogeneous Reconstruction by Gaussian Splatting

Zeng B, Liu S, Cheng S, Xu G, Fan H. (2026)

See all citations

Protein Data Bank Japan News

[2026-06-17]

324件のPDBエントリーが新たに公開されました。（2026-06-17付）