EMPIAR-13782
Cryo-EM structure of SARS-CoV-2 spike protein in complex with human neutralizing antibody WRAIR-2008 [multiple data sets in MRC format]
Publication:

First-generation N-terminal domain supersite public antibodies retain activity against Omicron-derived lineages and protect mice against Omicron BA.5 challenge

Jensen JLJ, Thomas PVT, Joyce MGJ

mBio (---)

Related EMDB entry:
Deposited:
2025-08-14
Released:
2026-07-20
Last modified:
2026-07-20
Imageset size:
928.71 GB
Imageset DOI:
Experimental metadata:
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Contains:
  • micrographs - single frame
  • reconstructed volumes
1. Motion corrected, SARS-CoV-2 spike protein in complex with human neutralizing antibody WRAIR-2008
Category:
micrographs - single frame
Image format:
MRC
No. of images or tilt series:
10567
Image size:
(5760, 4092)
Pixel type:
32 BIT FLOAT
Pixel spacing:
(0.873, 0.873)
Details:
Motion corrected, SARS-CoV-2 spike protein in complex with human neutralizing antibody WRAIR-2008 collected using SerialEM on a K3 camera in counting, non-CDS mode on a JEOL CryoARM 200 operated at 200kV (Cs=2.7) in EFTEM mode with a 20eV slit. The nominal dose per movie was ~60 e/Å^2 and motion-correction was performed using CryoSPARC v4.4.0.

Picked particle stack is not included, but alignment metadata for final global reconstruction (EMDB: 48284 PDB: 9mi3 (global)) is included in refined_particles.star. Instructions for CryoSPARC or RELION import and reextraction are provided in README.txt.
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2. Static Masks used for Focused Local Refinement
Category:
reconstructed volumes
Image format:
MRC
No. of images or tilt series:
1
Image size:
(512, 512)
Pixel type:
32 BIT FLOAT
Pixel spacing:
(1.023, 1.023)
Details:
Static Masks used for Focused Local Refinement EMDB: 47928 PDB: 9ecz (focused refinement)
Files:
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