EMPIAR-13033 - Single particle cryoEM of Jumbophage Gp316/JADA protein [15625 multi-frame micrographs composed of 50 frames each in EER format]

EMPIAR-13033

Single particle cryoEM of Jumbophage Gp316/JADA protein [15625 multi-frame micrographs composed of 50 frames each in EER format]

Publication:

Molecular basis for anti-jumbo phage immunity by AVAST Type 5

Muralidharan A, Costa AR, Fierlier D, van den Berg DF, van den Bossche H, Zoumaro-Djayoon AD, Pabst M, Pacesa M, Correia BE, Brouns SJJ

bioRxiv (2025)

DOI: 10.1101/2025.07.08.663546

Related EMDB entry:

EMD-54139

Deposited:

2025-10-07

Released:

2025-12-07

Last modified:

2025-12-07

Imageset size:

6.38 TB

Imageset DOI:

10.6019/EMPIAR-13033

Experimental metadata:

Download xml json

Contains:

micrographs - multiframe

Image Sets

1. Unaligned multi-frame movies of Jumbophage Gp316/JADA protein homodimer

Category:

micrographs - multiframe

Image format:

EER

No. of images or tilt series:

15625

Image size:

(4096, 4096)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(0.726, 0.726)

Details:

300 kV, 2.7 mm, 50 e/A^2 exposure

Files:

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Citations

CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.

Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)

prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.

He L, Bartesaghi A. (2026)

Chart builder: an interactive tool for user driven data visualization in the electron microscopy data bank.

Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)

CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

Deep-learning methods for contrast enhancement and artifact reduction in cryo-electron tomography: a systematic analysis of the state of the art and proposed improvements.

Jones HN, Deshmukh A, Pande K. (2026)

CryoGS: High-Quality Cryo-EM Homogeneous Reconstruction by Gaussian Splatting

Zeng B, Liu S, Cheng S, Xu G, Fan H. (2026)

Point cloud deformation modeling for particle selection following cryo-EM 2D classification.

Wang X, Mo Z, Li F, Zhang F, Wan X. (2026)

ICECREAM: high-fidelity equivariant cryo-electron tomography.

Kishore V, Debarnot V, Righetto RD, Engel BD, Dokmanić I. (2026)

CryoSift: an accessible and automated CNN-driven tool for cryo-EM 2D class selection.

Schäfer JH, Calza A, Hom K, Damodar P, Peng R, Bogdanović N, Lander GC, Stagg SM, Cianfrocco MA. (2025)