EMPIAR-11577 - Cryo-electron tomograms of Host - S. Typhi interaction [multiple data sets in MRC format]

EMPIAR-11577

Cryo-electron tomograms of Host - S. Typhi interaction [multiple data sets in MRC format]

Publication:

The Parkinson's disease kinase LRRK2 coordinates a cell intrinsic defense pathway against the intracellular pathogen Salmonella

Lian H, Park D, Chen M, Schueder F, Lara-Tejero M, Liu J, Galan J

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Related EMDB entry:

EMD-41046

Deposited:

2023-06-07

Released:

2024-04-21

Last modified:

2024-04-21

Imageset size:

381.56 GB

Imageset DOI:

10.6019/EMPIAR-11577

Experimental metadata:

Download xml json

Contains:

tilt series

Image Sets

1. Unaligned tiltseries collected with Glacios at 3.827A/pix

Category:

tilt series

Image format:

MRC

No. of images or tilt series:

Image size:

(3838, 3710)

Pixel type:

UNSIGNED 32 BIT INTEGER

Pixel spacing:

(3.827, 3.827)

Details:

Tilt series collected with FEI Glacios (K2 camera) at 3.827A/pix. No energy filter. Target defocus = ~-6 micrometer.

Files:

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2. Unaligned tiltseries collected with Glacios at 3.384A/pix

Category:

tilt series

Image format:

MRC

No. of images or tilt series:

Image size:

(4092, 5760)

Pixel type:

UNSIGNED 32 BIT INTEGER

Pixel spacing:

(3.384, 3.384)

Details:

Tilt series collected with FEI Krios (K3 camera) at 3.384 A/pix. Used energy filter and VPP. Target defocus = -0.5 micrometer

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

3. Unaligned tiltseries collected with Glacios at 4.556A/pix

Category:

tilt series

Image format:

MRC

No. of images or tilt series:

Image size:

(4092, 5760)

Pixel type:

UNSIGNED 32 BIT INTEGER

Pixel spacing:

(4.556, 4.556)

Details:

Tilt series collected with FEI Krios (K3 camera) at 4.556 A/pix. Used energy filter and VPP. Target defocus = -0.5 micrometer

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

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Citations

prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.

He L, Bartesaghi A. (2026)

CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.

Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)

Chart builder: an interactive tool for user driven data visualization in the electron microscopy data bank.

Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)

CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

Deep-learning methods for contrast enhancement and artifact reduction in cryo-electron tomography: a systematic analysis of the state of the art and proposed improvements.

Jones HN, Deshmukh A, Pande K. (2026)

CryoGS: High-Quality Cryo-EM Homogeneous Reconstruction by Gaussian Splatting

Zeng B, Liu S, Cheng S, Xu G, Fan H. (2026)

Point cloud deformation modeling for particle selection following cryo-EM 2D classification.

Wang X, Mo Z, Li F, Zhang F, Wan X. (2026)

ICECREAM: high-fidelity equivariant cryo-electron tomography.

Kishore V, Debarnot V, Righetto RD, Engel BD, Dokmanić I. (2026)

CryoSift: an accessible and automated CNN-driven tool for cryo-EM 2D class selection.

Schäfer JH, Calza A, Hom K, Damodar P, Peng R, Bogdanović N, Lander GC, Stagg SM, Cianfrocco MA. (2025)