EMPIAR-11451
Cryo electron tomography of Cytochalasin D-induced protrusions of Drosophila S2 cells treated with DMSO or thapsigargin - Datasets 5 - 7 [multiple data sets in TIFF and MRC formats]
Publication:

CryoET shows cofilactin filaments inside the microtubule lumen

Ventura Santos C, Carter AP, Rogers SL

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Related EMDB entry:
Deposited:
2023-02-17
Released:
2023-07-10
Last modified:
2023-07-10
Imageset size:
373.12 GB
Imageset DOI:
Experimental metadata:
Download xml json
Contains:
  • micrographs - multiframe
  • reconstructed volumes
1. Dataset 5: Raw multi-frame tilt images of Cytochalasin D and DMSO or thapsigarging treated Drosophila S2 cells
Category:
micrographs - multiframe
Image format:
TIFF
No. of images or tilt series:
24
Image size:
(3710, 3838)
Pixel type:
UNSIGNED 16 BIT INTEGER
Pixel spacing:
(2.952, 2.952)
Details:
Data from Dataset 5. Raw multi-frame movies of tilt series collected on protrusions of Drosophila S2 cells induced with 2.5 uM Cytochalasin D for 4 hours and treated with either 0.1% DMSO (TS_201 - TS_214) or 2 uM thapsigargin (TS_215 - TS_228). The gain reference and defects files are provided within the folder. The pixel size is 2.952 Å/pixel. Data was collected on a K2 summit. Metadata from tilt series acquisition (Mdoc files) can be found within the Mdoc_files folder.
Files:
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2. Dataset 5: Binned, deconvolved tomograms of induced Drosophila S2 cell protrusions
Category:
reconstructed volumes
Image format:
MRC
No. of images or tilt series:
24
Image size:
(960, 928)
Pixel type:
32 BIT FLOAT
Pixel spacing:
(11.81, 11.81)
Details:
Dataset 5: Tomograms binned by 4 (11.808 Å/pixel), reconstructed and deconvolved in WARP. Tomograms TS_201 - TS_214 are of cells treated with 2.5 uM Cytochalasin D (4 hours) and 0.1% DMSO (5 hours). TS_215 - TS_228 are of cells treated with 2.5 uM Cytochalasin D (4 hours) and 2 uM thapsigargin (5 hours).
Files:
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3. Dataset 6: Raw multi-frame tilt images of Cytochalasin D and DMSO or thapsigarging treated Drosophila S2 cells
Category:
micrographs - multiframe
Image format:
TIFF
No. of images or tilt series:
33
Image size:
(3710, 3838)
Pixel type:
UNSIGNED 16 BIT INTEGER
Pixel spacing:
(2.952, 2.952)
Details:
Data from Dataset 6. Raw multi-frame movies of tilt series collected on protrusions of Drosophila S2 cells induced with 2.5 uM Cytochalasin D for 4 hours and treated with either 0.1% DMSO (TS_262 - TS_284) or 2 uM thapsigargin (TS_153 - TS_161 and TS_243 - TS_251). The gain reference and defects files are provided within the folder. The pixel size is 2.952 Å/pixel. Data was collected on a K2 summit. Metadata from tilt series acquisition (Mdoc files) can be found within the Mdoc_files folder.
Files:
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4. Dataset 6: Binned, deconvolved tomograms of induced Drosophila S2 cell protrusions
Category:
reconstructed volumes
Image format:
MRC
No. of images or tilt series:
33
Image size:
(960, 928)
Pixel type:
32 BIT FLOAT
Pixel spacing:
(11.81, 11.81)
Details:
Dataset 6: Tomograms binned by 4 (11.808 Å/pixel), reconstructed and deconvolved in WARP.
Tomograms TS_262 - TS_282 are of cells treated with 2.5 uM Cytochalasin D (4 hours) and 0.1% DMSO (5 hours). TS_153 - TS_161 and TS_243 - TS_251 are of cells treated with 2.5 uM Cytochalasin D (4 hours) and 2 uM thapsigargin (5 hours).
Files:
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5. Dataset 7: Raw multi-frame tilt images of Cytochalasin D and DMSO or thapsigarging treated Drosophila S2 cells
Category:
micrographs - multiframe
Image format:
TIFF
No. of images or tilt series:
33
Image size:
(5760, 4092)
Pixel type:
UNSIGNED BYTE
Pixel spacing:
(2.659, 2.659)
Details:
Data from Dataset 7. Raw multi-frame movies of tilt series collected on protrusions of Drosophila S2 cells induced with 2.5 uM Cytochalasin D for 4 hours and treated with either 0.1% DMSO (TS_304 - TS_328) or 2 uM thapsigargin (TS_285 - TS_303 and TS_329). The gain reference is provided within the folder. The pixel size is 2.659 Å/pixel. Data was collected on a K3 detector. Metadata from tilt series acquisition (Mdoc files) can be found within the Mdoc_files folder.
Files:
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6. Dataset 7: Binned, deconvolved tomograms of induced Drosophila S2 cell protrusions
Category:
reconstructed volumes
Image format:
MRC
No. of images or tilt series:
33
Image size:
(1022, 1440)
Pixel type:
32 BIT FLOAT
Pixel spacing:
(10.64, 10.64)
Details:
Dataset 6: Tomograms binned by 4 (10.64 Å/pixel), reconstructed and deconvolved in WARP.
Tomograms TS_304 - TS_328 are of cells treated with 2.5 uM Cytochalasin D (4 hours) and 0.1% DMSO (5 hours). TS_285 - TS_303 and TS_329 are of cells treated with 2.5 uM Cytochalasin D (4 hours) and 2 uM thapsigargin (5 hours).
Files:
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Files:
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