EMPIAR-10365 - Whole-body integration of gene expression and single-cell morphology [11416 micrographs in TIFF format]

EMPIAR-10365

Whole-body integration of gene expression and single-cell morphology [11416 micrographs in TIFF format]

Publication:

Whole-body integration of gene expression and single-cell morphology

Vergara HM, Pape C, Meechan KI, Zinchenko V, Genoud C, Wanner AA, Mutemi KN, Titze B, Templin RM, Bertucci PY, Simakov O, Dürichen W, Machado P, Savage EL, Schermelleh L, Schwab Y, Friedrich RW, Kreshuk A, Tischer C, Arendt D

Cell 184 (2021) 4819-4837.e22

PMID: 34380046

DOI: 10.1016/j.cell.2021.07.017

Related EMDB entry:

Deposited:

2020-02-12

Released:

2020-05-19

Last modified:

2022-02-08

Imageset size:

1.68 TB

Imageset DOI:

10.6019/EMPIAR-10365

Experimental metadata:

Download xml json

Contains:

micrographs - single frame

Image Sets

1. Serial Block Face Electron Microscopy Volume of 6 day post fertilisation platynereis dumerilii

Category:

micrographs - single frame

Image format:

TIFF

No. of images or tilt series:

11416

Image size:

(25916, 27499)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(None, None)

Details:

SBEM volume of 6 day old Platynereis dumerilii larvae imaged at FMI Basel. The script "data_export.py" in the /data directory can be used to stitch together the tif files in directory /data/sbem-6dpf-1-whole-raw to generate the final volume (and vice versa). The images creating the volume are aligned.

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Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

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