EMPIAR-12659 - FIB-SEM Nicotiana benthamiana epidermal cell [multiple data sets in TIFF format]

EMPIAR-12659

FIB-SEM Nicotiana benthamiana epidermal cell [multiple data sets in TIFF format]

Publication:

A conventional fixation volume electron microscopy protocol for plants

Wickramanayake J, Czymmek KJ

Methods in Cell Biology (---)

DOI: 10.1016/bs.mcb.2023.04.008

Related EMDB entry:

Deposited:

2025-03-04

Released:

2025-07-08

Last modified:

2025-07-08

Imageset size:

623.49 GB

Imageset DOI:

10.6019/EMPIAR-12659

Experimental metadata:

Download xml json

Contains:

reconstructed volumes

Image Sets

1. FIB-SEM Nicotiana benthamiana epidermal cell dataset - Merge images aligned by Amira

Category:

reconstructed volumes

Image format:

TIFF

No. of images or tilt series:

6113

Image size:

(10208, 3925)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(6.0, 6.0)

Details:

Aligned merge images by Amira

Files:

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2. FIB-SEM Nicotiana benthamiana epidermal cell dataset - High resolution of ROI

Category:

reconstructed volumes

Image format:

TIFF

No. of images or tilt series:

6113

Image size:

(10208, 3925)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(6.0, 6.0)

Details:

High resolution of ROI

Files:

This entry cannot be downloaded from PDBj.

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

3. FIB-SEM Nicotiana benthamiana epidermal cell dataset - Low resolution

Category:

reconstructed volumes

Image format:

TIFF

No. of images or tilt series:

6113

Image size:

(1225, 471)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(500.0, 500.0)

Details:

Low resolution

Files:

This entry cannot be downloaded from PDBj.

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

4. FIB-SEM Nicotiana benthamiana epidermal cell dataset - Manual user annotation of ROI on Low resolution image

Category:

reconstructed volumes

Image format:

TIFF

No. of images or tilt series:

Image size:

(1225, 471)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(500.0, 500.0)

Details:

Manual user annotation of ROI on Low resolution images

Files:

This entry cannot be downloaded from PDBj.

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

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Hicks CW, Rahman S, Gloor SL, Fields JK, Husby NL, Vaidya A, Maier KE, Morgan M, Keogh MC, Wolberger C. (2024)

Molecular recognition of an odorant by the murine trace amine-associated receptor TAAR7f.

Gusach A, Lee Y, Khoshgrudi AN, Mukhaleva E, Ma N, Koers EJ, Chen Q, Edwards PC, Huang F, Kim J, Mancia F, Veprintsev DB, Vaidehi N, Weyand SN, Tate CG. (2024)

The novel ribosome biogenesis inhibitor usnic acid blocks nucleolar pre-60S maturation.

Kofler L, Grundmann L, Gerhalter M, Prattes M, Merl-Pham J, Zisser G, Grishkovskaya I, Hodirnau VV, Vareka M, Breinbauer R, Hauck SM, Haselbach D, Bergler H. (2024)

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