EMPIAR-12659 - FIB-SEM Nicotiana benthamiana epidermal cell [multiple data sets in TIFF format]

EMPIAR-12659

FIB-SEM Nicotiana benthamiana epidermal cell [multiple data sets in TIFF format]

Publication:

A conventional fixation volume electron microscopy protocol for plants

Wickramanayake J, Czymmek KJ

Methods in Cell Biology (---)

DOI: 10.1016/bs.mcb.2023.04.008

Related EMDB entry:

Deposited:

2025-03-04

Released:

2025-07-08

Last modified:

2025-07-08

Imageset size:

623.49 GB

Imageset DOI:

10.6019/EMPIAR-12659

Experimental metadata:

Download xml json

Contains:

reconstructed volumes

Image Sets

1. FIB-SEM Nicotiana benthamiana epidermal cell dataset - Merge images aligned by Amira

Category:

reconstructed volumes

Image format:

TIFF

No. of images or tilt series:

6113

Image size:

(10208, 3925)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(6.0, 6.0)

Details:

Aligned merge images by Amira

Files:

This entry cannot be downloaded from PDBj.

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2. FIB-SEM Nicotiana benthamiana epidermal cell dataset - High resolution of ROI

Category:

reconstructed volumes

Image format:

TIFF

No. of images or tilt series:

6113

Image size:

(10208, 3925)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(6.0, 6.0)

Details:

High resolution of ROI

Files:

This entry cannot be downloaded from PDBj.

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

3. FIB-SEM Nicotiana benthamiana epidermal cell dataset - Low resolution

Category:

reconstructed volumes

Image format:

TIFF

No. of images or tilt series:

6113

Image size:

(1225, 471)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(500.0, 500.0)

Details:

Low resolution

Files:

This entry cannot be downloaded from PDBj.

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

4. FIB-SEM Nicotiana benthamiana epidermal cell dataset - Manual user annotation of ROI on Low resolution image

Category:

reconstructed volumes

Image format:

TIFF

No. of images or tilt series:

Image size:

(1225, 471)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(500.0, 500.0)

Details:

Manual user annotation of ROI on Low resolution images

Files:

This entry cannot be downloaded from PDBj.

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

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