EMPIAR-11472
Single particle cryo-EM dataset of human nucleolar and nuclear pre-60S assembly intermediates [multiple data sets in TIFF and MRCS formats]
Publication:

Principles of human pre-60S biogenesis

Vanden Broeck A, Klinge S

Science (New York, N.Y.) 381 (2023)

PMID: 37410842

Deposited:
2022-12-06
Released:
2023-09-26
Last modified:
2023-09-26
Imageset size:
140.46 TB
Imageset DOI:
Experimental metadata:
Download xml json
Contains:
  • micrographs - multiframe
  • micrographs - single frame
1. Unaligned multi-frame micrographs of human nucleolar and nuclear pre-60S assembly intermediates - Dataset 1
Category:
micrographs - multiframe
Image format:
TIFF
No. of images or tilt series:
44352
Image size:
(11520, 8184)
Pixel type:
UNSIGNED BYTE
Pixel spacing:
(0.54, 0.54)
Details:
The dataset was collected on a Titan Krios electron microscope operating at 300 kV equipped with an energy filter (slit width 20 eV), a Cs corrector and a K3 Summit detector set in super-resolution mode. Unaligned multi-frame micrographs were recorded at a nominal magnification of 64,000× with a pixel size of 0.54 Å/pixel, a defocus range of -0.5 to -2.5 µm, and a total dose of 60.0 e-/Å2 (40 frames). The gain reference was applied on-the-fly during data collection.
Files:
Loading...
2. Unaligned multi-frame micrographs of human nucleolar and nuclear pre-60S assembly intermediates - Dataset 2
Category:
micrographs - multiframe
Image format:
TIFF
No. of images or tilt series:
45846
Image size:
(11520, 8184)
Pixel type:
UNSIGNED BYTE
Pixel spacing:
(0.54, 0.54)
Details:
The dataset was collected on a Titan Krios electron microscope operating at 300 kV equipped with an energy filter (slit width 20 eV), a Cs corrector and a K3 Summit detector set in super-resolution mode. Unaligned multi-frame micrographs were recorded at a nominal magnification of 64,000× with a pixel size of 0.54 Å/pixel, a defocus range of -0.5 to -2.5 µm, and a total dose of 60.0 e-/Å2 (40 frames). The gain reference was applied on-the-fly during data collection.
Files:
Loading...
3. Unaligned multi-frame micrographs of human nucleolar and nuclear pre-60S assembly intermediates - Dataset 3
Category:
micrographs - multiframe
Image format:
TIFF
No. of images or tilt series:
44335
Image size:
(11520, 8184)
Pixel type:
UNSIGNED BYTE
Pixel spacing:
(0.54, 0.54)
Details:
The dataset was collected on a Titan Krios electron microscope operating at 300 kV equipped with an energy filter (slit width 20 eV), a Cs corrector and a K3 Summit detector set in super-resolution mode. Unaligned multi-frame micrographs were recorded at a nominal magnification of 64,000× with a pixel size of 0.54 Å/pixel, a defocus range of -0.5 to -2.5 µm, and a total dose of 60.0 e-/Å2 (40 frames). The gain reference was applied on-the-fly during data collection.
Files:
Loading...
4. Unaligned multi-frame micrographs of human nucleolar and nuclear pre-60S assembly intermediates - Dataset 4
Category:
micrographs - multiframe
Image format:
TIFF
No. of images or tilt series:
37166
Image size:
(11520, 8184)
Pixel type:
UNSIGNED BYTE
Pixel spacing:
(0.54, 0.54)
Details:
The dataset was collected on a Titan Krios electron microscope operating at 300 kV equipped with an energy filter (slit width 20 eV), a Cs corrector and a K3 Summit detector set in super-resolution mode. Unaligned multi-frame micrographs were recorded at a nominal magnification of 64,000× with a pixel size of 0.54 Å/pixel, a defocus range of -0.5 to -2.5 µm, and a total dose of 60.0 e-/Å2 (40 frames). The gain reference was applied on-the-fly during data collection.
Files:
Loading...
5. Polished particle stack of human nucleolar and nuclear pre-60S assembly intermediates
Category:
micrographs - single frame
Image format:
MRCS
No. of images or tilt series:
2474967
Image size:
(480, 480)
Pixel type:
32 BIT FLOAT
Pixel spacing:
(1.08, 1.08)
Details:
Merged set of pre-60S particles from four datasets. Particles are polished, magnification anisotropy corrected and per-particle defocus corrected. A Relion .star format file is provided and contains the final Euler angles, shifts and also the micrograph coordinates.
Files:
Loading...
Files:
Loading...

Ito F, Alvarez-Cabrera AL, Liu S, Yang H, Shiriaeva A, Zhou ZH, Chen XS. (2023)
Rigden DJ, Fernández XM. (2023)
Iudin A, Korir PK, Somasundharam S, Weyand S, Cattavitello C, Fonseca N, Salih O, Kleywegt GJ, Patwardhan A. (2023)
Serra Lleti JM, Steyer AM, Schieber NL, Neumann B, Tischer C, Hilsenstein V, Holtstrom M, Unrau D, Kirmse R, Lucocq JM, Pepperkok R, Schwab Y. (2023)
Caldwell BJ, Norris AS, Karbowski CF, Wiegand AM, Wysocki VH, Bell CE. (2022)