EMPIAR-10555 - Nudaurelia capensis omega virus procapsid: virus-like particles expressed in Nicotiana benthamiana [multiple data sets in MRC format]

EMPIAR-10555

Nudaurelia capensis omega virus procapsid: virus-like particles expressed in Nicotiana benthamiana [multiple data sets in MRC format]

Publication:

Plant-expressed virus-like particles reveal the intricate maturation process of a eukaryotic virus

Castells-Graells R, Ribeiro JRS, Domitrovic T, Hesketh EL, Scarff CA, Johnson JE, Ranson NA, Lawson DM, Lomonossoff GP

Communications biology 4 (2021)

PMID: 34031522

DOI: 10.1038/s42003-021-02134-w

Related EMDB entry:

EMD-11911

Deposited:

2020-11-12

Released:

2022-02-01

Last modified:

2022-02-01

Imageset size:

1.04 TB

Imageset DOI:

10.6019/EMPIAR-10555

Experimental metadata:

Download xml json

Contains:

micrographs - single frame

Image Sets

1. aligned and dose-weighted micrographs

Category:

micrographs - single frame

Image format:

MRC

No. of images or tilt series:

8554

Image size:

(4096, 4096)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(1.0651, 1.0651)

Details:

Micrographs are averages of aligned and dose-weighted movies comprised of 49 frames

data/shift_eps_files - EPS files showing motion correction trajectories for each movie in the dataset. Also provided is a PDF summarising trajectories for the whole dataset.

Files:

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Download a list of selected files.

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rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

2. aligned and non-dose-weighted micrographs

Category:

micrographs - single frame

Image format:

MRC

No. of images or tilt series:

8554

Image size:

(4096, 4096)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(1.0651, 1.0651)

Details:

Micrographs are averages of aligned and non-dose-weighted movies comprised of 49 frames

data/shift_eps_files - EPS files showing motion correction trajectories for each movie in the dataset. Also provided is a PDF summarising trajectories for the whole dataset.

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

Browse All Files

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Citations

Small LEA proteins mitigate air-water interface damage to fragile cryo-EM samples during plunge freezing.

Abe KM, Li G, He Q, Grant T, Lim CJ. (2024)

Outer membrane protein assembly mediated by BAM-SurA complexes.

Fenn KL, Horne JE, Crossley JA, Böhringer N, Horne RJ, Schäberle TF, Calabrese AN, Radford SE, Ranson NA. (2024)

Ubiquitinated histone H2B as gatekeeper of the nucleosome acidic patch.

Hicks CW, Rahman S, Gloor SL, Fields JK, Husby NL, Vaidya A, Maier KE, Morgan M, Keogh MC, Wolberger C. (2024)

Molecular recognition of an odorant by the murine trace amine-associated receptor TAAR7f.

Gusach A, Lee Y, Khoshgrudi AN, Mukhaleva E, Ma N, Koers EJ, Chen Q, Edwards PC, Huang F, Kim J, Mancia F, Veprintsev DB, Vaidehi N, Weyand SN, Tate CG. (2024)

The novel ribosome biogenesis inhibitor usnic acid blocks nucleolar pre-60S maturation.

Kofler L, Grundmann L, Gerhalter M, Prattes M, Merl-Pham J, Zisser G, Grishkovskaya I, Hodirnau VV, Vareka M, Breinbauer R, Hauck SM, Haselbach D, Bergler H. (2024)

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