EMPIAR-10555 - Nudaurelia capensis omega virus procapsid: virus-like particles expressed in Nicotiana benthamiana [multiple data sets in MRC format]

EMPIAR-10555

Nudaurelia capensis omega virus procapsid: virus-like particles expressed in Nicotiana benthamiana [multiple data sets in MRC format]

Publication:

Plant-expressed virus-like particles reveal the intricate maturation process of a eukaryotic virus

Castells-Graells R, Ribeiro JRS, Domitrovic T, Hesketh EL, Scarff CA, Johnson JE, Ranson NA, Lawson DM, Lomonossoff GP

Communications biology 4 (2021)

PMID: 34031522

DOI: 10.1038/s42003-021-02134-w

Related EMDB entry:

EMD-11911

Deposited:

2020-11-12

Released:

2022-02-01

Last modified:

2022-02-01

Imageset size:

1.04 TB

Imageset DOI:

10.6019/EMPIAR-10555

Experimental metadata:

Download xml json

Contains:

micrographs - single frame

Image Sets

1. aligned and dose-weighted micrographs

Category:

micrographs - single frame

Image format:

MRC

No. of images or tilt series:

8554

Image size:

(4096, 4096)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(1.0651, 1.0651)

Details:

Micrographs are averages of aligned and dose-weighted movies comprised of 49 frames

data/shift_eps_files - EPS files showing motion correction trajectories for each movie in the dataset. Also provided is a PDF summarising trajectories for the whole dataset.

Files:

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選択したファイルのリストをダウンロードします。

rsyncコマンド等でファイルリストを指定してダウンロードすることが可能です。

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

2. aligned and non-dose-weighted micrographs

Category:

micrographs - single frame

Image format:

MRC

No. of images or tilt series:

8554

Image size:

(4096, 4096)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(1.0651, 1.0651)

Details:

Micrographs are averages of aligned and non-dose-weighted movies comprised of 49 frames

data/shift_eps_files - EPS files showing motion correction trajectories for each movie in the dataset. Also provided is a PDF summarising trajectories for the whole dataset.

Files:

選択したファイルを無圧縮zipファイルにアーカイブ化してダウンロードします。

rsync、aspera、globus 等の利用をおすすめします。

選択したファイルのリストをダウンロードします。

rsyncコマンド等でファイルリストを指定してダウンロードすることが可能です。

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

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Citations

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Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)

prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.

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CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

Dual site targeting of the bacterial 70S ribosome by tetracyclines.

Devarkar SC, Lomakin IB, Wang J, Grada A, Bunick CG. (2026)

Deep-learning methods for contrast enhancement and artifact reduction in cryo-electron tomography: a systematic analysis of the state of the art and proposed improvements.

Jones HN, Deshmukh A, Pande K. (2026)

CryoGS: High-Quality Cryo-EM Homogeneous Reconstruction by Gaussian Splatting

Zeng B, Liu S, Cheng S, Xu G, Fan H. (2026)

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Protein Data Bank Japan News

[2026-06-17]

324件のPDBエントリーが新たに公開されました。（2026-06-17付）