EMPIAR-11424 - Cryo-EM micrographs of HIV-1 Vif bound to human APOBEC3H, CBF-beta, ELOB, ELOC, and N-terminal domain of CUL5 [14766 multi-frame micrographs composed of 49 frames each in TIFF format]

EMPIAR-11424

Cryo-EM micrographs of HIV-1 Vif bound to human APOBEC3H, CBF-beta, ELOB, ELOC, and N-terminal domain of CUL5 [14766 multi-frame micrographs composed of 49 frames each in TIFF format]

Publication:

Structural basis of HIV-1 Vif-mediated E3 ligase targeting of host APOBEC3H

Ito F, Alvarez-Cabrera AL, Kim K, Zhou ZH, Chen XS

Nature communications 14 (2023)

PMID: 37640699

DOI: 10.1038/s41467-023-40955-x

Related EMDB entry:

EMD-29488 EMD-29489

Deposited:

2023-02-09

Released:

2023-09-08

Last modified:

2023-09-08

Imageset size:

2.21 TB

Imageset DOI:

10.6019/EMPIAR-11424

Experimental metadata:

Download xml json

Contains:

micrographs - multiframe

Image Sets

1. Unaligned multi-frame micrographs of APOBEC3H and HIV-1 Vif complex with CBF-beta, ELOB, ELOC, and N-terminal domain of CUL5

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

14766

Image size:

(5760, 4092)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(0.51, 0.51)

Details:

The gain reference image gainrefbin2.mrc is in the root directory, it needs to be flipped in Y.

Files:

Archives and downloads the selected files into an uncompressed zip file.

Depending on the number and size of files to be downloaded, this can take an enormous amount of time. Also, this feature is unstable and may not work properly, and checksums of downloaded files are not verified.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

Browse All Files

Quick Links

Talks and Tutorials

EMPIAR Quick tour

Statistics

Publications

Re-use case study

EMPIAR in the news

Claim entries to your ORCiD

COVID-19 Data Portal

EMDB

PDBe

BioImage Archive

EMNavigator@PDBj

PDBj

RCSB@PDBj

EMDataResoruce@RCSB,EMDB,NCMI

Citations

Small LEA proteins mitigate air-water interface damage to fragile cryo-EM samples during plunge freezing.

Abe KM, Li G, He Q, Grant T, Lim CJ. (2024)

Outer membrane protein assembly mediated by BAM-SurA complexes.

Fenn KL, Horne JE, Crossley JA, Böhringer N, Horne RJ, Schäberle TF, Calabrese AN, Radford SE, Ranson NA. (2024)

Ubiquitinated histone H2B as gatekeeper of the nucleosome acidic patch.

Hicks CW, Rahman S, Gloor SL, Fields JK, Husby NL, Vaidya A, Maier KE, Morgan M, Keogh MC, Wolberger C. (2024)

Molecular recognition of an odorant by the murine trace amine-associated receptor TAAR7f.

Gusach A, Lee Y, Khoshgrudi AN, Mukhaleva E, Ma N, Koers EJ, Chen Q, Edwards PC, Huang F, Kim J, Mancia F, Veprintsev DB, Vaidehi N, Weyand SN, Tate CG. (2024)

The novel ribosome biogenesis inhibitor usnic acid blocks nucleolar pre-60S maturation.

Kofler L, Grundmann L, Gerhalter M, Prattes M, Merl-Pham J, Zisser G, Grishkovskaya I, Hodirnau VV, Vareka M, Breinbauer R, Hauck SM, Haselbach D, Bergler H. (2024)

See all citations

Protein Data Bank Japan News

[2025-02-05]

286 new PDB entries have been released on 2025-02-05.

[2025-01-30]

[wwPDB] Take the PDBx/mmCIF User Guide Survey and Win!

[2025-01-17]

[wwPDB] PDB-Dev now PDB-IHM

[2025-01-09]

[wwPDB] Time-stamped Copies of PDB and EMDB Archives

[2024-11-28]

[wwPDB] Access SDF/MOL formatted CCD files from the PDB archive