EMPIAR-11424 - Cryo-EM micrographs of HIV-1 Vif bound to human APOBEC3H, CBF-beta, ELOB, ELOC, and N-terminal domain of CUL5 [14766 multi-frame micrographs composed of 49 frames each in TIFF format]

EMPIAR-11424

Cryo-EM micrographs of HIV-1 Vif bound to human APOBEC3H, CBF-beta, ELOB, ELOC, and N-terminal domain of CUL5 [14766 multi-frame micrographs composed of 49 frames each in TIFF format]

Publication:

Structural basis of HIV-1 Vif-mediated E3 ligase targeting of host APOBEC3H

Ito F, Alvarez-Cabrera AL, Kim K, Zhou ZH, Chen XS

Nature communications 14 (2023)

PMID: 37640699

DOI: 10.1038/s41467-023-40955-x

Related EMDB entry:

EMD-29488 EMD-29489

Deposited:

2023-02-09

Released:

2023-09-08

Last modified:

2023-09-08

Imageset size:

2.21 TB

Imageset DOI:

10.6019/EMPIAR-11424

Experimental metadata:

Download xml json

Contains:

micrographs - multiframe

Image Sets

1. Unaligned multi-frame micrographs of APOBEC3H and HIV-1 Vif complex with CBF-beta, ELOB, ELOC, and N-terminal domain of CUL5

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

14766

Image size:

(5760, 4092)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(0.51, 0.51)

Details:

The gain reference image gainrefbin2.mrc is in the root directory, it needs to be flipped in Y.

Files:

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Citations

A variational framework with composite sparse regularization for cryo-electron tomography reconstruction.

Yu C, Xu Z, Zeng Q, Wan X, El-Messiry H, Zhang F, Han R. (2026)

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Poudel B, Gyawali R, Dhakal A, Cheng J, Xu D. (2026)

CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.

Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)

prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.

He L, Bartesaghi A. (2026)

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Kong L, Zottig X, Elferich J, Grigorieff N. (2026)

Chart builder: an interactive tool for user driven data visualization in the electron microscopy data bank.

Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)

CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

Dual site targeting of the bacterial 70S ribosome by tetracyclines.

Devarkar SC, Lomakin IB, Wang J, Grada A, Bunick CG. (2026)

Deep-learning methods for contrast enhancement and artifact reduction in cryo-electron tomography: a systematic analysis of the state of the art and proposed improvements.

Jones HN, Deshmukh A, Pande K. (2026)

CryoGS: High-Quality Cryo-EM Homogeneous Reconstruction by Gaussian Splatting

Zeng B, Liu S, Cheng S, Xu G, Fan H. (2026)

See all citations

Protein Data Bank Japan News

[2026-06-10]

333件のPDBエントリーが新たに公開されました。（2026-06-10付）