EMPIAR-10562 - Micro X ray tomography of mesoscopic placental tissue [multiple data sets in TIFF and BIG DATA VIEWER HDF5 formats]

EMPIAR-10562

Micro X ray tomography of mesoscopic placental tissue [multiple data sets in TIFF and BIG DATA VIEWER HDF5 formats]

Publication:

A massively multi-scale approach to characterising tissue architecture by synchrotron micro-CT applied to the human placenta

Tun W, Poologasundarampillai G, Bischof H, Nye G, King ONF, Basham M, Tokudome M, Lewis RM, Johnstone ED, Brownbill P, Darrow M, Chernyavsky IL

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Related EMDB entry:

Deposited:

2020-11-06

Released:

2021-04-14

Last modified:

2021-04-14

Imageset size:

75.30 GB

Imageset DOI:

10.6019/EMPIAR-10562

Experimental metadata:

Download xml json

Contains:

tilt series

Image Sets

1. Tiff sequences of micro X ray tomogram of human placental tissue

Category:

tilt series

Image format:

TIFF

No. of images or tilt series:

2120

Image size:

(2520, 2520)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(None, None)

Details:

---

Files:

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2. Segmented data of placental tissue and vascular network

Category:

tilt series

Image format:

BIG DATA VIEWER HDF5

No. of images or tilt series:

Image size:

(None, None)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(None, None)

Details:

---

Files:

Archives and downloads the selected files into an uncompressed zip file.

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3. Training data for U-Net algorithm in predicting placental tissue and vascular network

Category:

tilt series

Image format:

BIG DATA VIEWER HDF5

No. of images or tilt series:

Image size:

(None, None)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(None, None)

Details:

---

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

Browse All Files

Files:

Archives and downloads the selected files into an uncompressed zip file.

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Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

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