EMPIAR-13540 - Cryo-electron tomography reveals paracellular claudin-15 pores at the tight junction [multiple data sets in MRC format]

EMPIAR-13540

Cryo-electron tomography reveals paracellular claudin-15 pores at the tight junction [multiple data sets in MRC format]

Publication:

Cryo-electron tomography reveals paracellular claudin-15 pores at the tight junction

Demchenko EA, McGuinness S, Wood S, Kainov J, Pappas V, Austin J, Hyatt D, Khalili-Araghi F, Shen L, Weber CR

Biophysical journal (2026)

PMID: 42343561

DOI: 10.1016/j.bpj.2026.06.027

Related EMDB entry:

Deposited:

2026-04-14

Released:

2026-07-17

Last modified:

2026-07-17

Imageset size:

831.36 GB

Imageset DOI:

10.6019/EMPIAR-13540

Experimental metadata:

Download xml json

Contains:

micrographs - multiframe

Image Sets

1. CLDN15

Category:

micrographs - multiframe

Image format:

MRC

No. of images or tilt series:

Image size:

(None, None)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(None, None)

Details:

The folder contains subfolders corresponding to different tomograms that were collected for the sample type (quinKO + CLDN15). Each tomogram folder has a reconstructed tomogram, an optional segmentation file and a subfolder with raw data.

Files:

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2. quinKO

Category:

micrographs - multiframe

Image format:

MRC

No. of images or tilt series:

Image size:

(None, None)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(None, None)

Details:

The folder contains subfolders corresponding to different tomograms that were collected for the sample type (quinKO). Each tomogram folder has a reconstructed tomogram, an optional segmentation file and a subfolder with raw data.

Files:

This entry cannot be downloaded from PDBj.

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

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Citations

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Burton Smith RN, Murata K. (2026)

An unattended image-processing pipeline for on-the-fly quality assessment and 3D exploration in cryo-EM.

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AlignPCA-2D: PCA-reduced Euclidean vector alignment for 2D classification in cryo-EM.

Ramírez-Aportela E, Zarrabeitia OL, Fonseca YC, Ceska T, Subramaniam S, Carazo JM, Sorzano COS. (2026)

Helical reconstruction of amyloids in cryoSPARC.

Schaefer JH, O'Neill RT, Donnelly JP, Powers ET, Kelly JW, Lander GC. (2026)

A variational framework with composite sparse regularization for cryo-electron tomography reconstruction.

Yu C, Xu Z, Zeng Q, Wan X, El-Messiry H, Zhang F, Han R. (2026)

CryoFSL: an annotation-efficient, few-shot learning framework for robust protein particle picking in cryo-electron microscopy micrographs.

Poudel B, Gyawali R, Dhakal A, Cheng J, Xu D. (2026)

prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.

He L, Bartesaghi A. (2026)

CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.

Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)

Unbend, correction of local beam-induced sample motion in cryo-EM images using a 3D spline model.

Kong L, Zottig X, Elferich J, Grigorieff N. (2026)

Chart builder: an interactive tool for user driven data visualization in the electron microscopy data bank.

Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)

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