EMPIAR-13456
BG505.SOSIP.664.T332N gp140 trimer in complex with 44m bnAb [4916 multi-frame micrographs composed of 20 frames each in MRC format]
Publication:

Recognition determinants of improved HIV-1 neutralization by a heavy chain matured pediatric antibody

Dutta S

iscience 9 (2023) 813-831

PMID: 37649696

Related EMDB entry:
Deposited:
2025-12-12
Released:
2026-04-20
Last modified:
2026-04-20
Imageset size:
733.30 GB
Imageset DOI:
Experimental metadata:
Download xml json

Compressed by PDBj:

Image formats and pixel types shown below are those of the original, non-compressed files.

Movies in this entry were compressed by EMPIAR Japan to save space and bandwidth.
The compression is lossless in that all pixel intensities remain exactly the same after decompression.
However, some metadata in the MRC header were lost.
The original files before compression are available from EMPIAR EBI.

Compression was carried out by separating (“un-normalizing”) the gain.
The details of the method are described in
https://relion.readthedocs.io/en/release-3.1/Reference/MovieCompression.html#gain-normalised-movies.

The original deposition contained 4,373 movies in `data` (excluding the `data2` subdirectory) and
4,916 movies in `data/data2`. PDBj disovered that all movies in `data` were duplicates of the movies
in `data/data2` (some movies were present only in `data/data2`).
Therefore, 4,373 redundant movies in `data` were removed.

The 4,916 movies were re-grouped into three sub-directories (`gain1`, `gain2` and `gain3`) by the estimated gain.
Please apply the gain reference in each directory (gain?/gain-reference.mrc) during processing.

Original size:   5,478,740,080 kilobytes
Compressed size:   768,994,348 kilobytes
Contains:
  • micrographs - multiframe
1. Movies of BG505.SOSIP.664.T332N gp140 trimer in complex with 44m bnAb
Category:
micrographs - multiframe
Image format:
MRC
No. of images or tilt series:
4916
Image size:
(None, None)
Pixel type:
SIGNED 16 BIT INTEGER
Pixel spacing:
(1.17, 1.17)
Details:
---
Files:
Loading...
He L, Bartesaghi A. (2026)
Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)
Kong L, Zottig X, Elferich J, Grigorieff N. (2026)
Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)
Devarkar SC, Lomakin IB, Wang J, Grada A, Bunick CG. (2026)
Gyawali R, Dhakal A, Wang L, Cheng J. (2026)
Jones HN, Deshmukh A, Pande K. (2026)
Zeng B, Liu S, Cheng S, Xu G, Fan H. (2026)
Wang X, Mo Z, Li F, Zhang F, Wan X. (2026)
Schäfer JH, Calza A, Hom K, Damodar P, Peng R, Bogdanović N, Lander GC, Stagg SM, Cianfrocco MA. (2025)