EMPIAR-13446 - Cryo-EM structure of the IS621 recombinase in complex with bridge RNA, left-half DNA, and right-half DNA [multiple data sets in TIFF format]

EMPIAR-13446

Cryo-EM structure of the IS621 recombinase in complex with bridge RNA, left-half DNA, and right-half DNA [multiple data sets in TIFF format]

Publication:

Structural mechanism governing the directionality of bridge recombination

Hiraizumi M, Athukoralage JS, Perry NT, Tsujimoto E, Shiojiri N, Nagahata N, Lee L, Sun G, Durrant MG, Chandrasekaran SS, Konermann S, Yamashita K, Hsu PD, Nishimasu H

Nature (2026)

PMID: 42587149

DOI: 10.1038/s41586-026-10903-y

Related EMDB entry:

EMD-65979 EMD-65978

Deposited:

2026-03-28

Released:

2026-08-24

Last modified:

2026-08-24

Imageset size:

3.21 TB

Imageset DOI:

10.6019/EMPIAR-13446

Experimental metadata:

Download xml json

Contains:

micrographs - multiframe

Image Sets

1. EMD-65978 (pre)

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

6558

Image size:

(5760, 4092)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(0.83, 0.83)

Details:

Gain: data_1/GridSquare_26880948/Data/FoilHole_26915916_Data_26915121_26915123_20231226_165524_gain.tiff

Files:

Archives and downloads the selected files into an uncompressed zip file.

Depending on the number and size of files to be downloaded, this can take an enormous amount of time. Also, this feature is unstable and may not work properly, and checksums of downloaded files are not verified.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

2. EMD-65979 (post)

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

7668

Image size:

(5760, 4092)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(0.83, 0.83)

Details:

data_1 and data_2 were collected from different grids.
gain: data_1/GridSquare_24969694/Data/FoilHole_25057155_Data_25055102_25055104_20240125_225422_gain.tiff

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

Browse All Files

Quick Links

Browse EMPIAR

Sample Preparation Widget

Volume Browser

Tomo Viewer Prototype

Claim entries to your ORCiD

Talks and Tutorials

EMPIAR Quick tour

Publications

Re-use study

Statistics

EMPIAR in the news

COVID-19 Data Portal

EMDB

BioImage Archive

PDBe

EMNavigator@PDBj

PDBj

Citations

Post-acquisition super resolution for cryo-electron microscopy.

Burton Smith RN, Murata K. (2026)

AlignPCA-2D: PCA-reduced Euclidean vector alignment for 2D classification in cryo-EM.

Ramírez-Aportela E, Zarrabeitia OL, Fonseca YC, Ceska T, Subramaniam S, Carazo JM, Sorzano COS. (2026)

Helical reconstruction of amyloids in cryoSPARC.

Schaefer JH, O'Neill RT, Donnelly JP, Powers ET, Kelly JW, Lander GC. (2026)

A variational framework with composite sparse regularization for cryo-electron tomography reconstruction.

Yu C, Xu Z, Zeng Q, Wan X, El-Messiry H, Zhang F, Han R. (2026)

CryoFSL: an annotation-efficient, few-shot learning framework for robust protein particle picking in cryo-electron microscopy micrographs.

Poudel B, Gyawali R, Dhakal A, Cheng J, Xu D. (2026)

An unattended image-processing pipeline for on-the-fly quality assessment and 3D exploration in cryo-EM.

Marchán Torres D, Conesa P, Garcia A, Iceta M, Broche L, Gragera M, Linares R, Kwong HS, Chichón FJ, Svensson O, Arranz R, Effantin G, Kandiah E, Carazo JM, Sorzano COS. (2026)

prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.

He L, Bartesaghi A. (2026)

CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.

Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)

Unbend, correction of local beam-induced sample motion in cryo-EM images using a 3D spline model.

Kong L, Zottig X, Elferich J, Grigorieff N. (2026)

CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

See all citations

Protein Data Bank Japan News

[2020-07-15]

PDBj는 2020 년 7 월에 20 주년을 맞이했습니다.