EMPIAR-13260 - FIB-SEM of 2-cell-stage like cells (2CLC) in mouse embryonic stem cells (mESC) [multiple data sets in MRC format]

EMPIAR-13260

FIB-SEM of 2-cell-stage like cells (2CLC) in mouse embryonic stem cells (mESC) [multiple data sets in MRC format]

Publication:

Alterations in chromatin organization promote totipotent-like features in a DPPA2/DUX-dependent manner

Narayan K, Ruiz S

(---)

Related EMDB entry:

Deposited:

2026-01-27

Released:

2026-03-17

Last modified:

2026-03-17

Imageset size:

11.76 GB

Imageset DOI:

10.6019/EMPIAR-13260

Experimental metadata:

Download xml json

Contains:

reconstructed volumes

Image Sets

1. CMM186B_Ruiz_IAA_48hr: Aligned, contrast-inverted and binned FIB-SEM reconstructions of mouse embryonic 2-cell-stage-like cells, treated with indole-3-acetic acid (IAA)

Category:

reconstructed volumes

Image format:

MRC

No. of images or tilt series:

1878

Image size:

(3253, 1528)

Pixel type:

SIGNED BYTE

Pixel spacing:

(150.0, 150.0)

Details:

Original data collected at 5 x 5 x 15 nm pixel sampling, then binned by 3 in xy to yield isotropic volumes

Files:

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2. CONTROL: CMM186A_Ruiz_Control_48hr. Aligned, contrast-inverted and binned FIB-SEM reconstructions of untreated mouse embryonic 2-cell-stage-like cells

Category:

reconstructed volumes

Image format:

MRC

No. of images or tilt series:

1739

Image size:

(2861, 661)

Pixel type:

SIGNED BYTE

Pixel spacing:

(150.0, 150.0)

Details:

Original data collected at 5 x 5 x 15 nm pixel sampling, then binned by 3 in xy to yield isotropic volumes

Files:

This entry cannot be downloaded from PDBj.

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

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