EMPIAR-13217 - Structure of a headful DNA-packaging bacterial virus at 2.89 Angstrom resolution by electron cryo-microscopy [multiple data sets in MRC format]

EMPIAR-13217

Structure of a headful DNA-packaging bacterial virus at 2.89 Angstrom resolution by electron cryo-microscopy [multiple data sets in MRC format]

Publication:

Structure of a headful DNA-packaging bacterial virus at 2.9 Å resolution by electron cryo-microscopy

Zhao H, Li K, Jiang W, Tang L

Proceedings of the National Academy of Sciences of the United States of America 114 (2017) 3601-3606

PMID: 28320961

DOI: 10.1073/pnas.1615025114

Related EMDB entry:

EMD-8314

Deposited:

2026-01-15

Released:

2026-01-26

Last modified:

2026-03-03

Imageset size:

1.14 TB

Imageset DOI:

10.6019/EMPIAR-13217

Experimental metadata:

Download xml json

Compressed by PDBj:

Image formats and pixel types shown below are those of the original, non-compressed files.

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Contains:

micrographs - multiframe
micrographs - single frame

Image Sets

1. unaligned multi-frame micrographs

Category:

micrographs - multiframe

Image format:

MRC

No. of images or tilt series:

2009

Image size:

(7420, 7676)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(0.84, 0.84)

Details:

Coordinates of picked particles are in the folder boxdb-2009 in the eman2 convention and in boxdb-2009-for-relion in the relion convention.

Files:

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2. single-frame micrographs aligned and averaged by Leginon, bin1

Category:

micrographs - single frame

Image format:

MRC

No. of images or tilt series:

2009

Image size:

(7420, 7676)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(0.84, 0.84)

Details:

---

Files:

Archives and downloads the selected files into an uncompressed zip file.

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3. single-frame micrographs aligned and averaged by Leginon, bin2

Category:

micrographs - single frame

Image format:

MRC

No. of images or tilt series:

2009

Image size:

(3710, 3838)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(1.68, 1.68)

Details:

---

Files:

Archives and downloads the selected files into an uncompressed zip file.

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4. Leginon grid target images

Category:

micrographs - single frame

Image format:

MRC

No. of images or tilt series:

Image size:

(927, 959)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(None, None)

Details:

---

Files:

Archives and downloads the selected files into an uncompressed zip file.

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5. Leginon square target images

Category:

micrographs - single frame

Image format:

MRC

No. of images or tilt series:

Image size:

(927, 959)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(None, None)

Details:

---

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

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6. Leginon hole target images

Category:

micrographs - single frame

Image format:

MRC

No. of images or tilt series:

242

Image size:

(927, 959)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(None, None)

Details:

---

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

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It is possible to download files by specifying the file list with rsync command, etc.

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7. dose estimation image during Leginon data collection

Category:

micrographs - single frame

Image format:

MRC

No. of images or tilt series:

Image size:

(3696, 3696)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(None, None)

Details:

---

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

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Citations

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Point cloud deformation modeling for particle selection following cryo-EM 2D classification.

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ICECREAM: high-fidelity equivariant cryo-electron tomography.

Kishore V, Debarnot V, Righetto RD, Engel BD, Dokmanić I. (2026)