EMPIAR-12848 - Single-particle cryo-electron microscopy of PlPVC1 particle in contracted state - raw micrographs [17274 multi-frame micrographs composed of 1494 frames each in EER format]

EMPIAR-12848

Single-particle cryo-electron microscopy of PlPVC1 particle in contracted state - raw micrographs [17274 multi-frame micrographs composed of 1494 frames each in EER format]

Publication:

Structural characterization of an extracellular contractile injection system from Photorhabdus luminescens in extended and contracted states

Marin-Arraiza L, Roa-Eguiara A, Pape T, Sofos N, Hendriks IA, Lund Nielsen M, Steiner-Rebrova EM, Taylor NMI

Nature Communications (2025)

DOI: 10.1038/s41467-025-64377-z

Related EMDB entry:

EMD-53143 EMD-53141

Deposited:

2025-06-12

Released:

2025-10-22

Last modified:

2025-11-05

Imageset size:

14.03 TB

Imageset DOI:

10.6019/EMPIAR-12848

Experimental metadata:

Download xml json

Contains:

micrographs - multiframe

Image Sets

1. Raw multi-frame micrographs of PlPVC1 particle in contracted state

Category:

micrographs - multiframe

Image format:

EER

No. of images or tilt series:

17274

Image size:

(4096, 4096)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(1.2, 1.2)

Details:

---

Files:

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Citations

prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.

He L, Bartesaghi A. (2026)

CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.

Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)

Chart builder: an interactive tool for user driven data visualization in the electron microscopy data bank.

Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)

CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

Deep-learning methods for contrast enhancement and artifact reduction in cryo-electron tomography: a systematic analysis of the state of the art and proposed improvements.

Jones HN, Deshmukh A, Pande K. (2026)

CryoGS: High-Quality Cryo-EM Homogeneous Reconstruction by Gaussian Splatting

Zeng B, Liu S, Cheng S, Xu G, Fan H. (2026)

Point cloud deformation modeling for particle selection following cryo-EM 2D classification.

Wang X, Mo Z, Li F, Zhang F, Wan X. (2026)

ICECREAM: high-fidelity equivariant cryo-electron tomography.

Kishore V, Debarnot V, Righetto RD, Engel BD, Dokmanić I. (2026)

CryoSift: an accessible and automated CNN-driven tool for cryo-EM 2D class selection.

Schäfer JH, Calza A, Hom K, Damodar P, Peng R, Bogdanović N, Lander GC, Stagg SM, Cianfrocco MA. (2025)