EMPIAR-12557 - 3D FIB/SEM Imaging of the Molecular Layer of the Mouse Dentate Gyrus [multiple data sets in TIFF format]

EMPIAR-12557

3D FIB/SEM Imaging of the Molecular Layer of the Mouse Dentate Gyrus [multiple data sets in TIFF format]

Publication:

Astrocytes functionally integrate single or multiple synapses via the specialized leaflet compartment

Benoit LB, Hristovska IH, Liaudet NL, De-Ceglia RDC, Jouneau PHJ, Fertin AF, Litvin DL, Telley LT, Jevtic JM, Bergami MB, Usson YU, Hisatsune CH, Mikoshiba KM, Pernet-Gallay KPG, Volterra AV

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Related EMDB entry:

Deposited:

2025-01-24

Released:

2025-10-23

Last modified:

2025-10-23

Imageset size:

258.17 GB

Imageset DOI:

10.6019/EMPIAR-12557

Experimental metadata:

Download xml json

Contains:

micrographs - multiframe

Image Sets

1. Unaligned mutli-frame FIB/SEM micrograph of the mice molecular layer of the hippocampus.

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

2501

Image size:

(3266, 2761)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(40.0, 40.0)

Details:

Unaligned FIB-SEM dataset of the mouse dentate gyrus of the hippocampus acquired at 4 nm isotropic voxel size, deposited as a single-frame image sequence in TIFF format. Details of the imaging procedure and exploitation of the dataset are available in the original publication

Files:

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2. Unaligned mutli-frame FIB/SEM micrograph of the mice molecular layer of the hippocampus.

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

3058

Image size:

(8768, 8768)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(40.0, 40.0)

Details:

Files:

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3. Unaligned mutli-frame FIB/SEM micrograph of the mice molecular layer of the hippocampus.

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

1108

Image size:

(7488, 7488)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(40.0, 40.0)

Details:

Files:

This entry cannot be downloaded from PDBj.

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

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4. Unaligned multi-frame FIB/SEM micrograph of the mouse molecular layer of the hippocampus after immunogold pre-embedding for IP3Rs.

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

3301

Image size:

(5504, 5504)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(40.0, 40.0)

Details:

Unaligned FIB-SEM dataset of the mouse dentate gyrus of the hippocampus with immunogold staining acquired at 4 nm isotropic voxel size, deposited as a single-frame image sequence in TIFF format. Details of the imaging procedure and exploitation of the dataset are available in the original publication

Files:

This entry cannot be downloaded from PDBj.

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

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5. Aligned multi-frame (as a multipage tif) FIB/SEM micrograph of the mouse molecular layer of the hippocampus after immunogold pre-embedding for Cx43

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

2395

Image size:

(3599, 4342)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(40.0, 40.0)

Details:

Aligned and cropped FIB-SEM dataset of the mouse dentate gyrus of the hippocampus with immunogold staining acquired at 4 nm isotropic voxel size, deposited as a multipage TIFF . Details of the imaging procedure and exploitation of the dataset are available in the original publication

Files:

This entry cannot be downloaded from PDBj.

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

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