EMPIAR-12469 - Cryo electron tomography of Chlamydomonas reinhardtii prepared using FIB milling [multiple data sets in MRC and MRCS formats]

EMPIAR-12469

Cryo electron tomography of Chlamydomonas reinhardtii prepared using FIB milling [multiple data sets in MRC and MRCS formats]

Publication:

MPicker: Visualizing and Picking Membrane Proteins for Cryo-Electron Tomography

Li X, Yan X, Li S, Huang W, Wang H, Zhao T, Huang M, Zhou N, Shen Y

Research Square (2024)

DOI: 10.21203/rs.3.rs-4404303/v1

Related EMDB entry:

EMD-61019

Deposited:

2024-11-30

Released:

2024-12-13

Last modified:

2024-12-13

Imageset size:

33.10 GB

Imageset DOI:

10.6019/EMPIAR-12469

Experimental metadata:

Download xml json

Contains:

reconstructed volumes
tilt series

Image Sets

1. Bin3 tomograms denoised by IsoNet

Category:

reconstructed volumes

Image format:

MRC

No. of images or tilt series:

Image size:

(1364, 1920)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(10.89, 10.89)

Details:

---

Files:

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2. Bin1 unaligned stacks and other files for running Relion4

Category:

tilt series

Image format:

MRCS

No. of images or tilt series:

Image size:

(5760, 4092)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(3.63, 3.63)

Details:

---

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

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Citations

prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.

He L, Bartesaghi A. (2026)

CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.

Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)

Chart builder: an interactive tool for user driven data visualization in the electron microscopy data bank.

Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)

CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

Deep-learning methods for contrast enhancement and artifact reduction in cryo-electron tomography: a systematic analysis of the state of the art and proposed improvements.

Jones HN, Deshmukh A, Pande K. (2026)

CryoGS: High-Quality Cryo-EM Homogeneous Reconstruction by Gaussian Splatting

Zeng B, Liu S, Cheng S, Xu G, Fan H. (2026)

Point cloud deformation modeling for particle selection following cryo-EM 2D classification.

Wang X, Mo Z, Li F, Zhang F, Wan X. (2026)

ICECREAM: high-fidelity equivariant cryo-electron tomography.

Kishore V, Debarnot V, Righetto RD, Engel BD, Dokmanić I. (2026)

CryoSift: an accessible and automated CNN-driven tool for cryo-EM 2D class selection.

Schäfer JH, Calza A, Hom K, Damodar P, Peng R, Bogdanović N, Lander GC, Stagg SM, Cianfrocco MA. (2025)