EMPIAR-12093 - Cryo-EM structure of the full-length Pseudomonas aeruginosa bacteriophytochrome in its Pfr and Pr states [multiple data sets in TIFF and MRC formats]

EMPIAR-12093

Cryo-EM structure of the full-length Pseudomonas aeruginosa bacteriophytochrome in its Pfr and Pr states [multiple data sets in TIFF and MRC formats]

Publication:

Bacteriophytochrome activation mechanisms revealed by full-length bathy bacteriophytochrome structures

Bodizs SB

(---)

DOI: 10.1016/j.str.2024.08.008

Related EMDB entry:

EMD-19989 EMD-19981

Deposited:

2024-04-01

Released:

2024-09-06

Last modified:

2024-09-06

Imageset size:

19.27 TB

Imageset DOI:

10.6019/EMPIAR-12093

Experimental metadata:

Download xml json

Contains:

micrographs - multiframe
picked particles - single frame - processed

Image Sets

1. Raw micrographs of PaBphP in its Pfr state

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

15496

Image size:

(400, 400)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(0.828, 0.828)

Details:

---

Files:

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2. Raw micrographs of PaBphP in its Pr state, dataset 1

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

13501

Image size:

(400, 400)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(0.828, 0.828)

Details:

---

Files:

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3. Raw micrographs of PaBphP in its Pr state, dataset 2

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

16835

Image size:

(400, 400)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(0.828, 0.828)

Details:

---

Files:

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4. Aligned particle images of PaBphP in its Pfr state

Category:

picked particles - single frame - processed

Image format:

MRC

No. of images or tilt series:

1103315

Image size:

(400, 400)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(0.828, 0.828)

Details:

---

Files:

This entry cannot be downloaded from PDBj.

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5. Aligned particle images of PaBphP in its Pr state

Category:

picked particles - single frame - processed

Image format:

MRC

No. of images or tilt series:

889461

Image size:

(400, 400)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(0.828, 0.828)

Details:

---

Files:

This entry cannot be downloaded from PDBj.

Archives and downloads the selected files into an uncompressed zip file.

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Citations

prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.

He L, Bartesaghi A. (2026)

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Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)

Chart builder: an interactive tool for user driven data visualization in the electron microscopy data bank.

Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)

CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

Deep-learning methods for contrast enhancement and artifact reduction in cryo-electron tomography: a systematic analysis of the state of the art and proposed improvements.

Jones HN, Deshmukh A, Pande K. (2026)

CryoGS: High-Quality Cryo-EM Homogeneous Reconstruction by Gaussian Splatting

Zeng B, Liu S, Cheng S, Xu G, Fan H. (2026)

Point cloud deformation modeling for particle selection following cryo-EM 2D classification.

Wang X, Mo Z, Li F, Zhang F, Wan X. (2026)

ICECREAM: high-fidelity equivariant cryo-electron tomography.

Kishore V, Debarnot V, Righetto RD, Engel BD, Dokmanić I. (2026)

CryoSift: an accessible and automated CNN-driven tool for cryo-EM 2D class selection.

Schäfer JH, Calza A, Hom K, Damodar P, Peng R, Bogdanović N, Lander GC, Stagg SM, Cianfrocco MA. (2025)