EMPIAR-11970 - Single particle cryoEM dataset of nucleosomes containing H2AK119ub [12211 multi-frame micrographs composed of 199 frames each in EER format]

EMPIAR-11970

Single particle cryoEM dataset of nucleosomes containing H2AK119ub [12211 multi-frame micrographs composed of 199 frames each in EER format]

Publication:

Ubiquitinated histone H2B as gatekeeper of the nucleosome acidic patch

Hicks CW, Wolberger C

(---)

Related EMDB entry:

EMD-29781 EMD-29778

Deposited:

2024-01-19

Released:

2025-07-10

Last modified:

2025-07-10

Imageset size:

6.64 TB

Imageset DOI:

10.6019/EMPIAR-11970

Experimental metadata:

Download xml json

Contains:

micrographs - multiframe

Image Sets

1. Unaligned multi-frame micrographs of H2AK119ub-modified nucleosome

Category:

micrographs - multiframe

Image format:

EER

No. of images or tilt series:

12211

Image size:

(4096, 4096)

Pixel type:

BIT

Pixel spacing:

(0.97, 0.97)

Details:

The gain reference file generated on 20220902 should be used with the raw data collected on 20220910, while the gain reference file generated on 20220919 should be used with the raw data collected on 20220925.

Files:

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Citations

prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.

He L, Bartesaghi A. (2026)

CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.

Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)

Chart builder: an interactive tool for user driven data visualization in the electron microscopy data bank.

Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)

CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

Deep-learning methods for contrast enhancement and artifact reduction in cryo-electron tomography: a systematic analysis of the state of the art and proposed improvements.

Jones HN, Deshmukh A, Pande K. (2026)

CryoGS: High-Quality Cryo-EM Homogeneous Reconstruction by Gaussian Splatting

Zeng B, Liu S, Cheng S, Xu G, Fan H. (2026)

Point cloud deformation modeling for particle selection following cryo-EM 2D classification.

Wang X, Mo Z, Li F, Zhang F, Wan X. (2026)

ICECREAM: high-fidelity equivariant cryo-electron tomography.

Kishore V, Debarnot V, Righetto RD, Engel BD, Dokmanić I. (2026)

CryoSift: an accessible and automated CNN-driven tool for cryo-EM 2D class selection.

Schäfer JH, Calza A, Hom K, Damodar P, Peng R, Bogdanović N, Lander GC, Stagg SM, Cianfrocco MA. (2025)