EMPIAR-11644 - Structural and quantum chemical basis for OCP-mediated quenching of phycobilisomes [16285 multi-frame micrographs composed of 1176 frames each in EER format]

EMPIAR-11644

Structural and quantum chemical basis for OCP-mediated quenching of phycobilisomes [16285 multi-frame micrographs composed of 1176 frames each in EER format]

Publication:

Structural and quantum chemical basis for OCP-mediated quenching of phycobilisomes

Sauer PV, Cupellini L, Sutter M, Bondanza M, Domínguez Martin MA, Kirst H, Bína D, Koh AF, Kotecha A, Greber BJ, Nogales E, Polívka T, Mennucci B, Kerfeld CA

Science advances 10 (2024)

PMID: 38578996

DOI: 10.1126/sciadv.adk7535

Related EMDB entry:

EMD-41434 EMD-41435 EMD-41463 EMD-41436

Deposited:

2023-07-11

Released:

2024-04-17

Last modified:

2024-04-17

Imageset size:

6.13 TB

Imageset DOI:

10.6019/EMPIAR-11644

Experimental metadata:

Download xml json

Contains:

micrographs - multiframe

Image Sets

1. Unaligned, unsubtracted raw EER micrographs of OCP-PBS sample

Category:

micrographs - multiframe

Image format:

EER

No. of images or tilt series:

16285

Image size:

(4096, 4096)

Pixel type:

BIT

Pixel spacing:

(0.727, 0.727)

Details:

Streptavidin crystal lattice is present in micrographs, Dose 40 electrons per square Angstrom, Dose per frame = 40/1176 = 0.034 e/A2, Defocus -0.4 to -1.2 um, collected on Falcon 4, Krios 300 kV, Gain reference is included

Files:

Archives and downloads the selected files into an uncompressed zip file.

Depending on the number and size of files to be downloaded, this can take an enormous amount of time. Also, this feature is unstable and may not work properly, and checksums of downloaded files are not verified.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

Browse All Files

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

Quick Links

Talks and Tutorials

EMPIAR Quick tour

Statistics

Publications

Re-use case study

EMPIAR in the news

Claim entries to your ORCiD

COVID-19 Data Portal

EMDB

PDBe

BioImage Archive

EMNavigator@PDBj

PDBj

RCSB@PDBj

EMDataResoruce@RCSB,EMDB,NCMI

Citations

Structural basis for HIV-1 antagonism of host APOBEC3G via Cullin E3 ligase.

Ito F, Alvarez-Cabrera AL, Liu S, Yang H, Shiriaeva A, Zhou ZH, Chen XS. (2023)

The 2023 Nucleic Acids Research Database Issue and the online molecular biology database collection.

Rigden DJ, Fernández XM. (2023)

EMPIAR: the Electron Microscopy Public Image Archive.

Iudin A, Korir PK, Somasundharam S, Weyand S, Cattavitello C, Fonseca N, Salih O, Kleywegt GJ, Patwardhan A. (2023)

CLEMSite, a software for automated phenotypic screens using light microscopy and FIB-SEM.

Serra Lleti JM, Steyer AM, Schieber NL, Neumann B, Tischer C, Hilsenstein V, Holtstrom M, Unrau D, Kirmse R, Lucocq JM, Pepperkok R, Schwab Y. (2023)

Structure of a RecT/Redβ family recombinase in complex with a duplex intermediate of DNA annealing.

Caldwell BJ, Norris AS, Karbowski CF, Wiegand AM, Wysocki VH, Bell CE. (2022)

See all citations

Protein Data Bank Japan News

[2020-07-15]

PDBj는 2020 년 7 월에 20 주년을 맞이했습니다.

[2019-02-20]

[wwPDB] 고분자결정구조 등록 시 PDBx/mmCIF 형식 파일만 허용됩니다.

[2017-11-16]

11 월 24 일 ~ 26 일, 텔레콤 센터 빌딩 (도쿄 오다이바)에서 개최되는 「사이언스 아고라 2017」에 출전합니다

[2016-01-28]

News on 2016-1-11

See all news