EMPIAR-10686 - Cryo-electron tomography of JCVI-Syn3A (small cell) [multiple data sets in MRC and TIFF formats]

EMPIAR-10686

Cryo-electron tomography of JCVI-Syn3A (small cell) [multiple data sets in MRC and TIFF formats]

Publication:

Generating Chromosome Geometries in a Minimal Cell From Cryo-Electron Tomograms and Chromosome Conformation Capture Maps

Gilbert BR, Thornburg ZR, Lam V, Rashid FM, Glass JI, Villa E, Dame RT, Luthey-Schulten Z

Frontiers in molecular biosciences 8 (2021)

PMID: 34368224

DOI: 10.3389/fmolb.2021.644133

Related EMDB entry:

EMD-23661

Deposited:

2021-03-31

Released:

2021-08-20

Last modified:

2021-08-20

Imageset size:

6.40 GB

Imageset DOI:

10.6019/EMPIAR-10686

Experimental metadata:

Download xml json

Contains:

tilt series
micrographs - multiframe

Image Sets

1. Unaligned Tilt-series of JCVI-Syn3A (small cell)

Category:

tilt series

Image format:

MRC

No. of images or tilt series:

Image size:

(3710, 3838)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(4.265, 4.265)

Details:

Tilt-series is dose-weighted and motion-corrected using Warp. The last two frames of each tilt were removed due to excessive motion.

Files:

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2. Multi-frame micrographs of each tilt for tilt-series of JCVI-Syn3A (small cell)

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

Image size:

(3710, 3838)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(4.265, 4.265)

Details:

Dark-subtracted frames from serialEM. Last two frames should be excluded due to excessive motion. Counting mode gain-reference is included in the same directory.

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

Browse All Files

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Hicks CW, Rahman S, Gloor SL, Fields JK, Husby NL, Vaidya A, Maier KE, Morgan M, Keogh MC, Wolberger C. (2024)

Molecular recognition of an odorant by the murine trace amine-associated receptor TAAR7f.

Gusach A, Lee Y, Khoshgrudi AN, Mukhaleva E, Ma N, Koers EJ, Chen Q, Edwards PC, Huang F, Kim J, Mancia F, Veprintsev DB, Vaidehi N, Weyand SN, Tate CG. (2024)

The novel ribosome biogenesis inhibitor usnic acid blocks nucleolar pre-60S maturation.

Kofler L, Grundmann L, Gerhalter M, Prattes M, Merl-Pham J, Zisser G, Grishkovskaya I, Hodirnau VV, Vareka M, Breinbauer R, Hauck SM, Haselbach D, Bergler H. (2024)

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