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Electron Microscopy Public Image Archive

EMPIAR-10029
A simulated cryoEM data set of GroEL particles [stack of 10000 particles in MRC format]
Publication:

Related EMDB entry:
Deposited:
2015-05-26
Released:
2015-06-18
Last modified:
2023-01-25
Imageset size:
1.50 GB
Imageset DOI:
10.6019/EMPIAR-10029
Experimental metadata:
Download xml json
Contains:
  • picked particles - multiframe - unprocessed
Image Sets
1. In-silico-generated particle stack
Category:
picked particles - multiframe - unprocessed
Image format:
MRC
No. of images or tilt series:
10000
Image size:
(200, 200)
Pixel type:
32 BIT FLOAT
Pixel spacing:
(1.42, 1.42)
Details:
10000 particles in 50 mrcs image stacks: micrograph_001.mrcs -> micrograph_050.mrcs
Please see the README.md file in the /data directory.
/data/micrograph_param.emx contains information about particle defoci and transformation in EMX format
/data/params contains text files with the defoci and transformation of individual particle images (micrograph_001.params -> micrograph_050.params)


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Citations
AlignPCA-2D: PCA-reduced Euclidean vector alignment for 2D classification in cryo-EM.
Ramírez-Aportela E, Zarrabeitia OL, Fonseca YC, Ceska T, Subramaniam S, Carazo JM, Sorzano COS. (2026)
A variational framework with composite sparse regularization for cryo-electron tomography reconstruction.
Yu C, Xu Z, Zeng Q, Wan X, El-Messiry H, Zhang F, Han R. (2026)
Helical reconstruction of amyloids in cryoSPARC.
Schaefer JH, O'Neill RT, Donnelly JP, Powers ET, Kelly JW, Lander GC. (2026)
An unattended image-processing pipeline for on-the-fly quality assessment and 3D exploration in cryo-EM.
Marchán Torres D, Conesa P, Garcia A, Iceta M, Broche L, Gragera M, Linares R, Kwong HS, Chichón FJ, Svensson O, Arranz R, Effantin G, Kandiah E, Carazo JM, Sorzano COS. (2026)
CryoFSL: an annotation-efficient, few-shot learning framework for robust protein particle picking in cryo-electron microscopy micrographs.
Poudel B, Gyawali R, Dhakal A, Cheng J, Xu D. (2026)
prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.
He L, Bartesaghi A. (2026)
CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.
Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)
Unbend, correction of local beam-induced sample motion in cryo-EM images using a 3D spline model.
Kong L, Zottig X, Elferich J, Grigorieff N. (2026)
CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.
Gyawali R, Dhakal A, Wang L, Cheng J. (2026)
Chart builder: an interactive tool for user driven data visualization in the electron microscopy data bank.
Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)
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