EMPIAR-12233 - Low-dose cryo-electron ptychography of Phi-92 Bacteriophage at 5.1 mrad [100 diffraction images in BIG DATA VIEWER HDF5 format]

EMPIAR-12233

Low-dose cryo-electron ptychography of Phi-92 Bacteriophage at 5.1 mrad [100 diffraction images in BIG DATA VIEWER HDF5 format]

Publication:

Low-dose cryo-electron ptychography of proteins at sub-nanometer resolution

Küçükoğlu B, Mohammed I, Guerrero-Ferreira RC, Kube M, Radecke J, Ribet SM, Varnavides G, Leidl ML, Lau K, Nazarov S, Myasnikov A, Sachse C, Müller-Caspary K, Ophus C, Stahlberg H

bioRxiv (2024)

DOI: 10.1101/2024.02.12.579607

Related EMDB entry:

EMD-19425 EMD-19885 EMD-19432 EMD-19430

Deposited:

2024-07-22

Released:

2024-11-06

Last modified:

2024-11-06

Imageset size:

137.42 GB

Imageset DOI:

10.6019/EMPIAR-12233

Experimental metadata:

Download xml json

Contains:

diffraction images

Image Sets

1. Diffraction patterns of Phi-92 Bacteriophage particles

Category:

diffraction images

Image format:

BIG DATA VIEWER HDF5

No. of images or tilt series:

100

Image size:

(None, None)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(None, None)

Details:

These are the 4D-STEM diffraction patterns of Phi-92 Bacteriophage particles. All of the information, such as acceleration voltage and scan pixel size, are available as metadata in the h5 file.

Files:

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Citations

A variational framework with composite sparse regularization for cryo-electron tomography reconstruction.

Yu C, Xu Z, Zeng Q, Wan X, El-Messiry H, Zhang F, Han R. (2026)

CryoFSL: an annotation-efficient, few-shot learning framework for robust protein particle picking in cryo-electron microscopy micrographs.

Poudel B, Gyawali R, Dhakal A, Cheng J, Xu D. (2026)

CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.

Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)

prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.

He L, Bartesaghi A. (2026)

Unbend, correction of local beam-induced sample motion in cryo-EM images using a 3D spline model.

Kong L, Zottig X, Elferich J, Grigorieff N. (2026)

Chart builder: an interactive tool for user driven data visualization in the electron microscopy data bank.

Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)

CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

Dual site targeting of the bacterial 70S ribosome by tetracyclines.

Devarkar SC, Lomakin IB, Wang J, Grada A, Bunick CG. (2026)

Deep-learning methods for contrast enhancement and artifact reduction in cryo-electron tomography: a systematic analysis of the state of the art and proposed improvements.

Jones HN, Deshmukh A, Pande K. (2026)

CryoGS: High-Quality Cryo-EM Homogeneous Reconstruction by Gaussian Splatting

Zeng B, Liu S, Cheng S, Xu G, Fan H. (2026)

See all citations

Protein Data Bank Japan News

[2026-06-10]

333件のPDBエントリーが新たに公開されました。（2026-06-10付）