EMPIAR-12158 - Single particle cryo-EM data of spinach cytochrome b6f with decylplastoquinone bound at plastoquinol reduction site [4613 multi-frame micrographs composed of 40 frames each in TIFF format]

EMPIAR-12158

Single particle cryo-EM data of spinach cytochrome b6f with decylplastoquinone bound at plastoquinol reduction site [4613 multi-frame micrographs composed of 40 frames each in TIFF format]

Publication:

Molecular basis of plastoquinone reduction in plant cytochrome b<sub>6</sub>f

Pintscher S, Pietras R, Mielecki B, Szwalec M, Wójcik-Augustyn A, Indyka P, Rawski M, Koziej Ł, Jaciuk M, Ważny G, Glatt S, Osyczka A

Nature plants 10 (2024) 1814-1825

PMID: 39362993

DOI: 10.1038/s41477-024-01804-x

Related EMDB entry:

EMD-19939

Deposited:

2024-06-24

Released:

2025-01-23

Last modified:

2025-01-23

Imageset size:

1.59 TB

Imageset DOI:

10.6019/EMPIAR-12158

Experimental metadata:

Download xml json

Contains:

micrographs - multiframe

Image Sets

1. Unaligned multi-frame micrographs of spinach cytochrome b6f during turnover (with substrate bound at Qi site)

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

4613

Image size:

(5760, 4092)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(0.86, 0.86)

Details:

---

Files:

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Citations

prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.

He L, Bartesaghi A. (2026)

CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.

Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)

Chart builder: an interactive tool for user driven data visualization in the electron microscopy data bank.

Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)

CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

Deep-learning methods for contrast enhancement and artifact reduction in cryo-electron tomography: a systematic analysis of the state of the art and proposed improvements.

Jones HN, Deshmukh A, Pande K. (2026)

CryoGS: High-Quality Cryo-EM Homogeneous Reconstruction by Gaussian Splatting

Zeng B, Liu S, Cheng S, Xu G, Fan H. (2026)

Point cloud deformation modeling for particle selection following cryo-EM 2D classification.

Wang X, Mo Z, Li F, Zhang F, Wan X. (2026)

ICECREAM: high-fidelity equivariant cryo-electron tomography.

Kishore V, Debarnot V, Righetto RD, Engel BD, Dokmanić I. (2026)

CryoSift: an accessible and automated CNN-driven tool for cryo-EM 2D class selection.

Schäfer JH, Calza A, Hom K, Damodar P, Peng R, Bogdanović N, Lander GC, Stagg SM, Cianfrocco MA. (2025)