EMPIAR-11461 - Single particle cryo-EM dataset of contracted cowpea chlorotic mottle virus in plunge-frozen vitrified ice [6651 multi-frame micrographs composed of 1533 frames each in EER format]

EMPIAR-11461

Single particle cryo-EM dataset of contracted cowpea chlorotic mottle virus in plunge-frozen vitrified ice [6651 multi-frame micrographs composed of 1533 frames each in EER format]

Publication:

Fast viral dynamics revealed by microsecond time-resolved cryo-EM

Harder OF, Barrass SV, Drabbels M, Lorenz UJ

Nature communications 14 (2023)

PMID: 37704664

DOI: 10.1038/s41467-023-41444-x

Related EMDB entry:

EMD-16400

Deposited:

2023-03-01

Released:

2024-01-16

Last modified:

2024-01-16

Imageset size:

3.43 TB

Imageset DOI:

10.6019/EMPIAR-11461

Experimental metadata:

Download xml json

Contains:

micrographs - multiframe

Image Sets

1. Single particle cryo-EM dataset of contracted cowpea chlorotic mottle virus in plunge-frozen vitrified ice

Category:

micrographs - multiframe

Image format:

EER

No. of images or tilt series:

6651

Image size:

(4096, 4096)

Pixel type:

BIT

Pixel spacing:

(0.726, 0.726)

Details:

These are the EER files from Falcon 4 detector - raw micrographs, not motion corrected

Gain reference image can be found in the /data/ directory.

Files:

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Citations

A variational framework with composite sparse regularization for cryo-electron tomography reconstruction.

Yu C, Xu Z, Zeng Q, Wan X, El-Messiry H, Zhang F, Han R. (2026)

CryoFSL: an annotation-efficient, few-shot learning framework for robust protein particle picking in cryo-electron microscopy micrographs.

Poudel B, Gyawali R, Dhakal A, Cheng J, Xu D. (2026)

prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.

He L, Bartesaghi A. (2026)

CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.

Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)

Unbend, correction of local beam-induced sample motion in cryo-EM images using a 3D spline model.

Kong L, Zottig X, Elferich J, Grigorieff N. (2026)

Chart builder: an interactive tool for user driven data visualization in the electron microscopy data bank.

Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)

CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

Dual site targeting of the bacterial 70S ribosome by tetracyclines.

Devarkar SC, Lomakin IB, Wang J, Grada A, Bunick CG. (2026)

Deep-learning methods for contrast enhancement and artifact reduction in cryo-electron tomography: a systematic analysis of the state of the art and proposed improvements.

Jones HN, Deshmukh A, Pande K. (2026)

CryoGS: High-Quality Cryo-EM Homogeneous Reconstruction by Gaussian Splatting

Zeng B, Liu S, Cheng S, Xu G, Fan H. (2026)

See all citations

Protein Data Bank Japan News

[2026-06-24]

379件のPDBエントリーが新たに公開されました。（2026-06-24付）