EMPIAR-11423 - Cryo-EM micrographs of HIV-1 Vif bound to human APOBEC3H, CBF-beta, ELOB, ELOC, CUL5, and RBX2 [12546 multi-frame micrographs composed of 2130 frames each in TIFF format]

EMPIAR-11423

Cryo-EM micrographs of HIV-1 Vif bound to human APOBEC3H, CBF-beta, ELOB, ELOC, CUL5, and RBX2 [12546 multi-frame micrographs composed of 2130 frames each in TIFF format]

Publication:

Structural basis of HIV-1 Vif-mediated E3 ligase targeting of host APOBEC3H

Ito F, Alvarez-Cabrera AL, Kim K, Zhou ZH, Chen XS

Nature communications 14 (2023)

PMID: 37640699

DOI: 10.1038/s41467-023-40955-x

Related EMDB entry:

EMD-29490

Deposited:

2022-12-05

Released:

2023-09-11

Last modified:

2023-09-11

Imageset size:

11.93 TB

Imageset DOI:

10.6019/EMPIAR-11423

Experimental metadata:

Download xml json

Contains:

micrographs - multiframe

Image Sets

1. Unaligned multi-frame micrographs of APOBEC3H and HIV-1 Vif complex with CBF-beta, ELOB, ELOC, CUL5, and RBX2

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

12546

Image size:

(4096, 4096)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(0.92, 0.92)

Details:

We recommend dividing the total frames into 40 frame movies for motion correction. The gain reference image is in the root directory, it does not need to be flipped or rotated.

Files:

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Citations

prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.

He L, Bartesaghi A. (2026)

CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.

Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)

Unbend, correction of local beam-induced sample motion in cryo-EM images using a 3D spline model.

Kong L, Zottig X, Elferich J, Grigorieff N. (2026)

Chart builder: an interactive tool for user driven data visualization in the electron microscopy data bank.

Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)

Dual site targeting of the bacterial 70S ribosome by tetracyclines.

Devarkar SC, Lomakin IB, Wang J, Grada A, Bunick CG. (2026)

CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

Deep-learning methods for contrast enhancement and artifact reduction in cryo-electron tomography: a systematic analysis of the state of the art and proposed improvements.

Jones HN, Deshmukh A, Pande K. (2026)

CryoGS: High-Quality Cryo-EM Homogeneous Reconstruction by Gaussian Splatting

Zeng B, Liu S, Cheng S, Xu G, Fan H. (2026)

Point cloud deformation modeling for particle selection following cryo-EM 2D classification.

Wang X, Mo Z, Li F, Zhang F, Wan X. (2026)

ICECREAM: high-fidelity equivariant cryo-electron tomography.

Kishore V, Debarnot V, Righetto RD, Engel BD, Dokmanić I. (2026)