EMPIAR-11245 - Escherichia coli gyrase holocomplex with 217 bp phage Mu SGS DNA and Albi-1 stabilised by ADPNP [8136 multi-frame micrographs composed of 40 frames each in TIFF format]

EMPIAR-11245

Escherichia coli gyrase holocomplex with 217 bp phage Mu SGS DNA and Albi-1 stabilised by ADPNP [8136 multi-frame micrographs composed of 40 frames each in TIFF format]

Publication:

Molecular mechanism of topoisomerase poisoning by a potent peptide antibiotic

Michalczyk E, Ghilarov D

Nature Catalysis (---)

Related EMDB entry:

EMD-14573 EMD-14574

Deposited:

2022-09-09

Released:

2023-06-13

Last modified:

2023-06-13

Imageset size:

2.93 TB

Imageset DOI:

10.6019/EMPIAR-11245

Experimental metadata:

Download xml json

Contains:

micrographs - multiframe

Image Sets

1. Un-aligned, gain-corrected multi frame movies of E. coli Gyrase Mu 217 Albi-1 complex

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

8136

Image size:

(5760, 4092)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(0.86, 0.86)

Details:

40 raw movie frames accumulating a total dose of 40 electron per square angstrom. Gain-normalised K3 TIFFs

Files:

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Citations

A variational framework with composite sparse regularization for cryo-electron tomography reconstruction.

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Poudel B, Gyawali R, Dhakal A, Cheng J, Xu D. (2026)

CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.

Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)

prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.

He L, Bartesaghi A. (2026)

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Kong L, Zottig X, Elferich J, Grigorieff N. (2026)

Chart builder: an interactive tool for user driven data visualization in the electron microscopy data bank.

Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)

CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

Dual site targeting of the bacterial 70S ribosome by tetracyclines.

Devarkar SC, Lomakin IB, Wang J, Grada A, Bunick CG. (2026)

Deep-learning methods for contrast enhancement and artifact reduction in cryo-electron tomography: a systematic analysis of the state of the art and proposed improvements.

Jones HN, Deshmukh A, Pande K. (2026)

CryoGS: High-Quality Cryo-EM Homogeneous Reconstruction by Gaussian Splatting

Zeng B, Liu S, Cheng S, Xu G, Fan H. (2026)

See all citations

Protein Data Bank Japan News

[2026-06-10]

333件のPDBエントリーが新たに公開されました。（2026-06-10付）