EMPIAR-11233 - Particle stack from TRPM8 bound to calcium dataset [multiple data sets in MRC format]

EMPIAR-11233

Particle stack from TRPM8 bound to calcium dataset [multiple data sets in MRC format]

Publication:

Structural insights into TRPM8 inhibition and desensitization

Diver MM, Cheng Y, Julius D

Science 365 (2019) 1434-1440

PMID: 31488702

DOI: 10.1126/science.aax6672

Related EMDB entry:

EMD-0639

Deposited:

2022-09-16

Released:

2022-10-04

Last modified:

2022-10-04

Imageset size:

129.71 GB

Imageset DOI:

10.6019/EMPIAR-11233

Experimental metadata:

Download xml json

Contains:

picked particles - single frame - processed

Image Sets

1. Dataset of TRPM8 bound to calcium, intermediate processed stack

Category:

picked particles - single frame - processed

Image format:

MRC

No. of images or tilt series:

297750

Image size:

(320, 320)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(1.059, 1.059)

Details:

This dataset contains TRPM8 particles bound to calcium. It is a larger particle stack containing ~300k particles, a subset of which yielded the final published reconstruction.

Files:

選択したファイルを無圧縮zipファイルにアーカイブ化してダウンロードします。

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rsync、aspera、globus 等の利用をおすすめします。

選択したファイルのリストをダウンロードします。

rsyncコマンド等でファイルリストを指定してダウンロードすることが可能です。

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

2. Dataset of TRPM8 bound to calcium, processed stack from final reconstruction

Category:

picked particles - single frame - processed

Image format:

MRC

No. of images or tilt series:

42040

Image size:

(320, 320)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(1.059, 1.059)

Details:

This dataset contains TRPM8 particles bound to calcium. It contains the ~40k particles that went into the final published reconstruction. It is a subset of the larger particle stack containing ~300k particles (uploaded in parallel).

Files:

選択したファイルを無圧縮zipファイルにアーカイブ化してダウンロードします。

rsync、aspera、globus 等の利用をおすすめします。

選択したファイルのリストをダウンロードします。

rsyncコマンド等でファイルリストを指定してダウンロードすることが可能です。

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

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Citations

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Devarkar SC, Lomakin IB, Wang J, Grada A, Bunick CG. (2026)

Deep-learning methods for contrast enhancement and artifact reduction in cryo-electron tomography: a systematic analysis of the state of the art and proposed improvements.

Jones HN, Deshmukh A, Pande K. (2026)

CryoGS: High-Quality Cryo-EM Homogeneous Reconstruction by Gaussian Splatting

Zeng B, Liu S, Cheng S, Xu G, Fan H. (2026)

See all citations

Protein Data Bank Japan News

[2026-06-10]

333件のPDBエントリーが新たに公開されました。（2026-06-10付）