EMPIAR-11115 - Cryo-EM dataset of P.berghei kinesin-8B motor domains in no nucleotide state bound to tubulin dimer [multiple data sets in MRC format]

EMPIAR-11115

Cryo-EM dataset of P.berghei kinesin-8B motor domains in no nucleotide state bound to tubulin dimer [multiple data sets in MRC format]

Publication:

Mechanochemical tuning of a kinesin motor essential for malaria parasite transmission

Liu T, Shilliday F, Cook AD, Tewari R, Sutherland CJ, Roberts AJ, Moores CA

bioRxiv (2022)

DOI: 10.1101/2022.02.11.480087

Related EMDB entry:

EMD-14459

Deposited:

2022-05-16

Released:

2022-10-31

Last modified:

2022-10-31

Imageset size:

890.03 GB

Imageset DOI:

10.6019/EMPIAR-11115

Experimental metadata:

Download xml json

Contains:

micrographs - single frame
micrographs - multiframe

Image Sets

1. Motion corrected micrographs of P.berghei kinesin-8B motor domain in no nucleotide state bound to tubulin dimer

Category:

micrographs - single frame

Image format:

MRC

No. of images or tilt series:

329

Image size:

(3710, 3838)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(1.35, 1.35)

Details:

Dataset was collected on a Tecnai G2 Polara with K2 camera operating in counting mode with a GIF Quantum LS imaging Filter and motion corrected using MotionCor2.

Files:

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rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

2. Unaligned multi-frame micrographs of P.berghei kinesin-8B motor domain in no nucleotide state bound to tubulin dimer.

Category:

micrographs - multiframe

Image format:

MRC

No. of images or tilt series:

329

Image size:

(3710, 3838)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(1.35, 1.35)

Details:

Dataset was collected on a Tecnai G2 Polara with K2 camera operating in counting mode with a GIF Quantum LS imaging Filter and motion corrected using MotionCor2.

Files:

選択したファイルを無圧縮zipファイルにアーカイブ化してダウンロードします。

rsync、aspera、globus 等の利用をおすすめします。

選択したファイルのリストをダウンロードします。

rsyncコマンド等でファイルリストを指定してダウンロードすることが可能です。

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

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Citations

prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.

He L, Bartesaghi A. (2026)

CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.

Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)

Chart builder: an interactive tool for user driven data visualization in the electron microscopy data bank.

Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)

CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

Deep-learning methods for contrast enhancement and artifact reduction in cryo-electron tomography: a systematic analysis of the state of the art and proposed improvements.

Jones HN, Deshmukh A, Pande K. (2026)

CryoGS: High-Quality Cryo-EM Homogeneous Reconstruction by Gaussian Splatting

Zeng B, Liu S, Cheng S, Xu G, Fan H. (2026)

Point cloud deformation modeling for particle selection following cryo-EM 2D classification.

Wang X, Mo Z, Li F, Zhang F, Wan X. (2026)

ICECREAM: high-fidelity equivariant cryo-electron tomography.

Kishore V, Debarnot V, Righetto RD, Engel BD, Dokmanić I. (2026)

CryoSift: an accessible and automated CNN-driven tool for cryo-EM 2D class selection.

Schäfer JH, Calza A, Hom K, Damodar P, Peng R, Bogdanović N, Lander GC, Stagg SM, Cianfrocco MA. (2025)