EMPIAR-11075 - Single-particle cryo-EM dataset of the Vairimorpha necatrix ribosome [3284 multi-frame micrographs composed of 32 frames each in TIFF format]

EMPIAR-11075

Single-particle cryo-EM dataset of the Vairimorpha necatrix ribosome [3284 multi-frame micrographs composed of 32 frames each in TIFF format]

Publication:

Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome

Barandun J, Hunziker M, Vossbrinck CR, Klinge S

Nature microbiology 4 (2019) 1798-1804

PMID: 31332387

DOI: 10.1038/s41564-019-0514-6

Related EMDB entry:

EMD-4935 EMD-4931 EMD-4932 EMD-4933 EMD-4934

Deposited:

2021-09-03

Released:

2022-07-01

Last modified:

2022-07-01

Imageset size:

1.03 TB

Imageset DOI:

10.6019/EMPIAR-11075

Experimental metadata:

Download xml json

Contains:

micrographs - multiframe

Image Sets

1. Unaligned multi-frame micrographs of the Vairimorpha necatrix ribosome

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

3284

Image size:

(None, None)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(0.6, 0.6)

Details:

Movies with 32 frames were collected at a dose of 8 electrons per pixel per second over an exposure time of 8 seconds. Defocus range of 0.5–4 μm, pixel size of 1.2 Å (0.6 Å super-resolution).

Files:

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Citations

A variational framework with composite sparse regularization for cryo-electron tomography reconstruction.

Yu C, Xu Z, Zeng Q, Wan X, El-Messiry H, Zhang F, Han R. (2026)

CryoFSL: an annotation-efficient, few-shot learning framework for robust protein particle picking in cryo-electron microscopy micrographs.

Poudel B, Gyawali R, Dhakal A, Cheng J, Xu D. (2026)

CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.

Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)

prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.

He L, Bartesaghi A. (2026)

Unbend, correction of local beam-induced sample motion in cryo-EM images using a 3D spline model.

Kong L, Zottig X, Elferich J, Grigorieff N. (2026)

Chart builder: an interactive tool for user driven data visualization in the electron microscopy data bank.

Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)

CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

Dual site targeting of the bacterial 70S ribosome by tetracyclines.

Devarkar SC, Lomakin IB, Wang J, Grada A, Bunick CG. (2026)

Deep-learning methods for contrast enhancement and artifact reduction in cryo-electron tomography: a systematic analysis of the state of the art and proposed improvements.

Jones HN, Deshmukh A, Pande K. (2026)

CryoGS: High-Quality Cryo-EM Homogeneous Reconstruction by Gaussian Splatting

Zeng B, Liu S, Cheng S, Xu G, Fan H. (2026)

See all citations

Protein Data Bank Japan News

[2026-06-10]

333件のPDBエントリーが新たに公開されました。（2026-06-10付）