EMPIAR-11073 - Cryo-EM structure of MrgD-Gi complex with beta-alanine [17087 multi-frame micrographs composed of 66 frames each in TIFF format]

EMPIAR-11073

Cryo-EM structure of MrgD-Gi complex with beta-alanine [17087 multi-frame micrographs composed of 66 frames each in TIFF format]

Publication:

Structural insight into the activation mechanism of MrgD with heterotrimeric Gi-protein revealed by cryo-EM

Suzuki S, Iida M, Hiroaki Y, Tanaka K, Kawamoto A, Kato T, Oshima A

Communications Biology (2022)

DOI: 10.1038/s42003-022-03668-3

Related EMDB entry:

EMD-33556 EMD-33554

Deposited:

2022-06-14

Released:

2022-08-08

Last modified:

2022-08-08

Imageset size:

4.06 TB

Imageset DOI:

10.6019/EMPIAR-11073

Experimental metadata:

Download xml json

Deposited via PDBj

Contains:

micrographs - multiframe

Image Sets

1. K3 movies for MrgD-Gi complex with beta-alanine

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

17087

Image size:

(5760, 4092)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(0.675, 0.675)

Details:

Acceleration Voltage: 300 kV
Cs: 0.01 mm (corrected by Cs corrector)
Total Dose: 60 electron/angstrom^2
Frames: 66 frames
Energy Filter: 20 eV
Record Mode: K3 (CDS mode)
Defocus Range: -0.5 μm to -1.7 μm.

gain_220416.mrc as a gain reference without rotation and flipping.

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Citations

A variational framework with composite sparse regularization for cryo-electron tomography reconstruction.

Yu C, Xu Z, Zeng Q, Wan X, El-Messiry H, Zhang F, Han R. (2026)

CryoFSL: an annotation-efficient, few-shot learning framework for robust protein particle picking in cryo-electron microscopy micrographs.

Poudel B, Gyawali R, Dhakal A, Cheng J, Xu D. (2026)

CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.

Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)

prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.

He L, Bartesaghi A. (2026)

Unbend, correction of local beam-induced sample motion in cryo-EM images using a 3D spline model.

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Chart builder: an interactive tool for user driven data visualization in the electron microscopy data bank.

Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)

CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

Dual site targeting of the bacterial 70S ribosome by tetracyclines.

Devarkar SC, Lomakin IB, Wang J, Grada A, Bunick CG. (2026)

Deep-learning methods for contrast enhancement and artifact reduction in cryo-electron tomography: a systematic analysis of the state of the art and proposed improvements.

Jones HN, Deshmukh A, Pande K. (2026)

CryoGS: High-Quality Cryo-EM Homogeneous Reconstruction by Gaussian Splatting

Zeng B, Liu S, Cheng S, Xu G, Fan H. (2026)

See all citations

Protein Data Bank Japan News

[2026-06-10]

333件のPDBエントリーが新たに公開されました。（2026-06-10付）