EMPIAR-10889 - Tilt series of EIAV CASPNC VLPs acquired on Krios G4 with Selectris X and Falcon 4 [multiple data sets in EER and MRC formats]

EMPIAR-10889

Tilt series of EIAV CASPNC VLPs acquired on Krios G4 with Selectris X and Falcon 4 [multiple data sets in EER and MRC formats]

Publication:

Exploring high-resolution cryo-ET and subtomogram averaging capabilities of contemporary DEDs

Obr M, Hagen WJ, Dick RA, Yu L, Kotecha A, Schur FK

bioRxiv (2022)

DOI: 10.1101/2022.01.10.475481

Related EMDB entry:

EMD-14032 EMD-14035 EMD-14036 EMD-14031

Deposited:

2021-12-20

Released:

2022-01-21

Last modified:

2022-02-10

Imageset size:

461.41 GB

Imageset DOI:

10.6019/EMPIAR-10889

Experimental metadata:

Download xml json

Contains:

micrographs - multiframe
tilt series

Image Sets

1. Unaligned movies of EIAV VLPs

Category:

micrographs - multiframe

Image format:

EER

No. of images or tilt series:

3408

Image size:

(4096, 4096)

Pixel type:

BIT

Pixel spacing:

(1.179, 1.179)

Details:

Please refer to the provided README.txt for more information. TS_99.mrc has something coming into the field of view at image 38 and obstructing it completely on the tilts after.

Files:

選択したファイルを無圧縮zipファイルにアーカイブ化してダウンロードします。

ダウンロードするファイル数やサイズによっては、膨大な時間がかかります。また、この機能は不安定で正常に動作しない可能性があり、ダウンロードされたファイルのチェックサムは検証されません。

rsync、aspera、globus 等の利用をおすすめします。

選択したファイルのリストをダウンロードします。

rsyncコマンド等でファイルリストを指定してダウンロードすることが可能です。

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

2. Tilt series of EIAV VLPs

Category:

tilt series

Image format:

MRC

No. of images or tilt series:

Image size:

(4096, 4096)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(1.179, 1.179)

Details:

Please refer to the provided README.txt for more information. TS_99.mrc has something coming into the field of view at image 38 and obstructing it completely on the tilts after.

Files:

選択したファイルを無圧縮zipファイルにアーカイブ化してダウンロードします。

rsync、aspera、globus 等の利用をおすすめします。

選択したファイルのリストをダウンロードします。

rsyncコマンド等でファイルリストを指定してダウンロードすることが可能です。

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

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Citations

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Poudel B, Gyawali R, Dhakal A, Cheng J, Xu D. (2026)

prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.

He L, Bartesaghi A. (2026)

CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.

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CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

Deep-learning methods for contrast enhancement and artifact reduction in cryo-electron tomography: a systematic analysis of the state of the art and proposed improvements.

Jones HN, Deshmukh A, Pande K. (2026)

Dual site targeting of the bacterial 70S ribosome by tetracyclines.

Devarkar SC, Lomakin IB, Wang J, Grada A, Bunick CG. (2026)

CryoGS: High-Quality Cryo-EM Homogeneous Reconstruction by Gaussian Splatting

Zeng B, Liu S, Cheng S, Xu G, Fan H. (2026)

See all citations

Protein Data Bank Japan News

[2026-06-24]

379件のPDBエントリーが新たに公開されました。（2026-06-24付）