EMPIAR-10797 - Cryo-EM structure of PilA-N/C from Geobacter sulfurreducens [7651 multi-frame micrographs composed of 27 frames each in TIFF format]

EMPIAR-10797

Cryo-EM structure of PilA-N/C from Geobacter sulfurreducens [7651 multi-frame micrographs composed of 27 frames each in TIFF format]

Publication:

Structure of Geobacter pili reveals secretory rather than nanowire behaviour

Gu Y, Srikanth V, Salazar-Morales AI, Jain R, O'Brien JP, Yi SM, Soni RK, Samatey FA, Yalcin SE, Malvankar NS

Nature 597 (2021) 430-434

PMID: 34471289

DOI: 10.1038/s41586-021-03857-w

Related EMDB entry:

EMD-21225

Deposited:

2021-09-08

Released:

2021-10-25

Last modified:

2021-10-25

Imageset size:

1.55 TB

Imageset DOI:

10.6019/EMPIAR-10797

Experimental metadata:

Download xml json

Contains:

micrographs - multiframe

Image Sets

1. Geobacter sulfurreducens PilA-N-C pili - raw unaligned/uncorrected super resolution images

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

7651

Image size:

(7676, 7420)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(0.426, 0.426)

Details:

The micrographs are raw unaligned/uncorrected super resolution images with 27 frames for each movie with physical pixel size of 0.822 Å. 62 e-/Å2 total dose.

Manually picked coordinates of start and end of the filaments can be found in directory: data/PilA_coord

Files:

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Citations

A variational framework with composite sparse regularization for cryo-electron tomography reconstruction.

Yu C, Xu Z, Zeng Q, Wan X, El-Messiry H, Zhang F, Han R. (2026)

CryoFSL: an annotation-efficient, few-shot learning framework for robust protein particle picking in cryo-electron microscopy micrographs.

Poudel B, Gyawali R, Dhakal A, Cheng J, Xu D. (2026)

CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.

Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)

prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.

He L, Bartesaghi A. (2026)

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Kong L, Zottig X, Elferich J, Grigorieff N. (2026)

Chart builder: an interactive tool for user driven data visualization in the electron microscopy data bank.

Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)

CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

Dual site targeting of the bacterial 70S ribosome by tetracyclines.

Devarkar SC, Lomakin IB, Wang J, Grada A, Bunick CG. (2026)

Deep-learning methods for contrast enhancement and artifact reduction in cryo-electron tomography: a systematic analysis of the state of the art and proposed improvements.

Jones HN, Deshmukh A, Pande K. (2026)

CryoGS: High-Quality Cryo-EM Homogeneous Reconstruction by Gaussian Splatting

Zeng B, Liu S, Cheng S, Xu G, Fan H. (2026)

See all citations

Protein Data Bank Japan News

[2026-06-10]

333件のPDBエントリーが新たに公開されました。（2026-06-10付）