EMPIAR-10773 - Cryo-electron tomography of rod outer segments in wild type mice acquired conventionally with defocus [2 reconstructed volumes in MRC format]

EMPIAR-10773

Cryo-electron tomography of rod outer segments in wild type mice acquired conventionally with defocus [2 reconstructed volumes in MRC format]

Publication:

Determinants shaping the nanoscale architecture of the mouse rod outer segment

Pöge M, Mahamid J, Imanishi SS, Plitzko JM, Palczewski K, Baumeister W

eLife 10 (2021)

PMID: 34931611

DOI: 10.7554/elife.72817

Related EMDB entry:

EMD-13321 EMD-13322

Deposited:

2021-07-16

Released:

2022-01-07

Last modified:

2022-01-07

Imageset size:

4.07 GB

Imageset DOI:

10.6019/EMPIAR-10773

Experimental metadata:

Download xml json

Contains:

reconstructed volumes

Image Sets

1. Tomograms of rod outer segments in wild type mice acquired conventionally with defocus

Category:

reconstructed volumes

Image format:

MRC

No. of images or tilt series:

Image size:

(928, 928)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(10.48, 10.48)

Details:

4x binned and dose filtered tomograms with dimensions 928x928x464. Tilt series were acquired conventionally with defocus. Projection images were recorded between -50° and 50° with an increment of 2°. The 310 frames are distributed over all projections. The total exposure per tilt-series was ~ 100e-/A^2.

Files:

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Citations

A variational framework with composite sparse regularization for cryo-electron tomography reconstruction.

Yu C, Xu Z, Zeng Q, Wan X, El-Messiry H, Zhang F, Han R. (2026)

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Poudel B, Gyawali R, Dhakal A, Cheng J, Xu D. (2026)

CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.

Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)

prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.

He L, Bartesaghi A. (2026)

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Kong L, Zottig X, Elferich J, Grigorieff N. (2026)

Chart builder: an interactive tool for user driven data visualization in the electron microscopy data bank.

Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)

CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

Dual site targeting of the bacterial 70S ribosome by tetracyclines.

Devarkar SC, Lomakin IB, Wang J, Grada A, Bunick CG. (2026)

Deep-learning methods for contrast enhancement and artifact reduction in cryo-electron tomography: a systematic analysis of the state of the art and proposed improvements.

Jones HN, Deshmukh A, Pande K. (2026)

CryoGS: High-Quality Cryo-EM Homogeneous Reconstruction by Gaussian Splatting

Zeng B, Liu S, Cheng S, Xu G, Fan H. (2026)

See all citations

Protein Data Bank Japan News

[2026-06-10]

333件のPDBエントリーが新たに公開されました。（2026-06-10付）