EMPIAR-10315 - Cryo electron microscopy of RyR1 in the presence and abscence of Ca, Caffeine and ATP ligands [stack of 791956 particles in SPIDER format]

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EMPIAR-10315

Cryo electron microscopy of RyR1 in the presence and abscence of Ca, Caffeine and ATP ligands [stack of 791956 particles in SPIDER format]

Publication:

Retrieving functional pathways of biomolecules from single-particle snapshots

Dashti A, Mashayekhi G, Shekhar M, Ben Hail D, Salah S, Schwander P, des Georges A, Singharoy A, Frank J, Ourmazd A

Nature communications 11 (2020)

PMID: 32948759

DOI: 10.1038/s41467-020-18403-x

Related EMDB entry:

EMD-20486

Deposited:

2019-07-19

Released:

2020-07-30

Last modified:

2021-08-25

Imageset size:

334.17 GB

Imageset DOI:

10.6019/EMPIAR-10315

Experimental metadata:

Download xml json

Contains:

picked particles - single frame - processed

Image Sets

1. Aligned stacks of images for both -/+ Ligand RyR1 datasets

Category:

picked particles - single frame - processed

Image format:

SPIDER

No. of images or tilt series:

791956

Image size:

(336, 336)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(1.255, 1.255)

Details:

This folder contains two stacks of picked particles and their alignments per bioRxiv, 291922.
1. the RyR1 in the absence of the ligands (stack_align_new.spi) with 431,231 particles
2. RyR1 in the presence of Ca, ATP and Caffeine (stack_aligned_2.spi) with 360,725 particles

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Citations

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Wang X, Mo Z, Li F, Zhang F, Wan X. (2026)

ICECREAM: high-fidelity equivariant cryo-electron tomography.

Kishore V, Debarnot V, Righetto RD, Engel BD, Dokmanić I. (2026)