EMPIAR-10059 - Structure of TRPV1 in complex with DkTx and RTX, determined in lipid nanodisc [multiple data sets in MRC format]

EMPIAR-10059

Structure of TRPV1 in complex with DkTx and RTX, determined in lipid nanodisc [multiple data sets in MRC format]

Publication:

TRPV1 structures in nanodiscs reveal mechanisms of ligand and lipid action

Gao Y, Cao E, Julius D, Cheng Y

Nature 534 (2016) 347-351

PMID: 27281200

DOI: 10.1038/nature17964

Related EMDB entry:

EMD-8117

Deposited:

2016-06-07

Released:

2016-06-07

Last modified:

2016-06-07

Imageset size:

93.75 GB

Imageset DOI:

10.6019/EMPIAR-10059

Experimental metadata:

Download xml json

Contains:

micrographs - single frame
picked particles - multiframe - unprocessed

Image Sets

1. Motion corrected, dose-weighted sum of micrographs of TRPV1-DkTx/RTX embedded in lipid nanodisc

Category:

micrographs - single frame

Image format:

MRC

No. of images or tilt series:

1200

Image size:

(3838, 3710)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(1.2156, 1.2156)

Details:

All image stacks (accumulating 41 electrons per squared Angstrom exposure in 30 frames / 6 second exposure) were drift-corrected using software UcsfDfCorr. '5 X 5' patch option was used. Dose rate was set to 1.4 electrons to perform the exposure filtering procedure implemented in the program. Deposited data is the sum of all corrected frames.

Files:

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2. Raw particle image stack of TRPV1-DkTx/RTX embedded in lipid nanodisc

Category:

picked particles - multiframe - unprocessed

Image format:

MRC

No. of images or tilt series:

218805

Image size:

(192, 192)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(1.2156, 1.2156)

Details:

Particle image stacks extracted from individual micrographs, without further processing.
'particles.star' list all relevant information for every particle in all image stacks (coordinate, defocus etc.)

Files:

選択したファイルを無圧縮zipファイルにアーカイブ化してダウンロードします。

rsync、aspera、globus 等の利用をおすすめします。

選択したファイルのリストをダウンロードします。

rsyncコマンド等でファイルリストを指定してダウンロードすることが可能です。

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

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Protein Data Bank Japan News

[2026-06-10]

333件のPDBエントリーが新たに公開されました。（2026-06-10付）