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EMPIAR-10053
SBF-SEM of trophozoite-stage malaria parasite infected red blood cell [110 micrographs in MRC format]
Publication:

Three-dimensional analysis of morphological changes in the malaria parasite infected red blood cell by serial block-face scanning electron microscopy

Sakaguchi M, Miyazaki N, Fujioka H, Kaneko O, Murata K

Journal of structural biology 193 (2016) 162-171

PMID: 26772147

Related EMDB entry:
Deposited:
2016-01-09
Released:
2016-01-20
Last modified:
2016-01-20
Imageset size:
268.56 MB
Imageset DOI:
10.6019/EMPIAR-10053
Experimental metadata:
Download xml json
Version history:
1
2016-10-07
REL
Added the citation information.
Contains:
  • micrographs - single frame
Image Sets
1. SBF-SEM of trophozoite-stage malaria parasite infected red blood cell
Category:
micrographs - single frame
Image format:
MRC
No. of images or tilt series:
110
Image size:
(1600, 1600)
Pixel type:
UNSIGNED BYTE
Pixel spacing:
(82.2, 82.2)
Details:
SBF-SEM
Species: Plasmodium falciparum
Microscope: ZEISS MERLIN at 1.2kV
Detector: Gatan BSED
Z sampling: 700A
Files:
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Citations
AlignPCA-2D: PCA-reduced Euclidean vector alignment for 2D classification in cryo-EM.
Ramírez-Aportela E, Zarrabeitia OL, Fonseca YC, Ceska T, Subramaniam S, Carazo JM, Sorzano COS. (2026)
A variational framework with composite sparse regularization for cryo-electron tomography reconstruction.
Yu C, Xu Z, Zeng Q, Wan X, El-Messiry H, Zhang F, Han R. (2026)
CryoFSL: an annotation-efficient, few-shot learning framework for robust protein particle picking in cryo-electron microscopy micrographs.
Poudel B, Gyawali R, Dhakal A, Cheng J, Xu D. (2026)
prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.
He L, Bartesaghi A. (2026)
CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.
Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)
Unbend, correction of local beam-induced sample motion in cryo-EM images using a 3D spline model.
Kong L, Zottig X, Elferich J, Grigorieff N. (2026)
CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.
Gyawali R, Dhakal A, Wang L, Cheng J. (2026)
Chart builder: an interactive tool for user driven data visualization in the electron microscopy data bank.
Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)
Deep-learning methods for contrast enhancement and artifact reduction in cryo-electron tomography: a systematic analysis of the state of the art and proposed improvements.
Jones HN, Deshmukh A, Pande K. (2026)
Dual site targeting of the bacterial 70S ribosome by tetracyclines.
Devarkar SC, Lomakin IB, Wang J, Grada A, Bunick CG. (2026)
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