EMPIAR-14061
Cryo-EM movies of the Mycobacterium tuberculosis ClpC1P1P2 protease complex bound to the activator Bz-Leu-Leu [10943 multi-frame micrographs composed of 666 frames each in EER format]
Publication:

Activation mechanism and structural assembly of the Mycobacterium tuberculosis ClpP1P2 protease and its associated ATPases

Weinhäupl K, Akopian T, Semchonok DA, Krandor O, Arranz R, Bueno-Carrasco MT, Gragera M, Chevreuil M, Raynal B, Zinga S, Liu Y, Lai J, Wu W, Bachovchin W, Gauto D, Goldberg A, Rubin E, Fraga H

Cell Reports 45 (2026)

PMID: 42213777

Related EMDB entry:
Deposited:
2026-10-15
Released:
2026-11-08
Last modified:
2026-11-08
Imageset size:
2.54 TB
Imageset DOI:
Experimental metadata:
Download xml json
Contains:
  • micrographs - multiframe
1. Unaligned multi-frame EER movies of the Mycobacterium tuberculosis ClpC1P1P2 protease complex bound to the activator Bz-Leu-Leu
Category:
micrographs - multiframe
Image format:
EER
No. of images or tilt series:
10943
Image size:
(4096, 4096)
Pixel type:
UNSIGNED BYTE
Pixel spacing:
(0.5248, 0.5248)
Details:
Raw, unaligned EER movies (not gain-corrected) recorded with EPU on a Talos Arctica (Thermo Fisher Scientific) operated at 200 kV (FEG, Cs 2.7 mm) and equipped with a Falcon 4i detector. Nominal magnification 190,000x; pixel size 0.5248 A/px (0.525 A/px in EMDB) for the 4096 x 4096 images, i.e. without EER upsampling. Each movie contains 666 EER frames; total fluence approximately 40 e-/A^2 (38.6-40.1 e-/A^2 according to the EER headers). Nominal defocus range -0.8 to -2.4 um. Folder layout: data/movies/batch_01-03 contains the 10,943 EER movies; data/epu_metadata/batch_01-03 contains the 10,942 corresponding EPU XML metadata files (one movie has no XML file); data/gain_reference/20240318_163908_EER_GainReference.gain is the gain reference to be applied to the EER movies. These movies were processed in cryoSPARC 4.6 to obtain EMD-52764, EMD-52765, EMD-52766 and EMD-52840 (PDB 9IF4). Acquisition values were read from the raw data headers and EPU metadata; Table 1 of the associated publication lists 120,000x magnification, 46 e-/A^2 and a defocus range of -0.8 to -2.2 um.
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