EMPIAR-13856 - Visualization of membrane-stabilized SorCS2 cis interactions [multiple data sets in MRC format]

EMPIAR-13856

Visualization of membrane-stabilized SorCS2 cis interactions [multiple data sets in MRC format]

Publication:

Visualization of membrane-stabilized SorCS2 <i>cis</i> interactions

Beugelink JW, Janssen BJC

Journal of structural biology: X 14 (2026)

PMID: 42568954

DOI: 10.1016/j.yjsbx.2026.100155

Related EMDB entry:

EMD-58430 EMD-58432 EMD-58434 EMD-58431 EMD-58429 EMD-58433

Deposited:

2026-07-22

Released:

2026-08-25

Last modified:

2026-08-25

Imageset size:

2.93 GB

Imageset DOI:

10.6019/EMPIAR-13856

Experimental metadata:

Download xml json

Contains:

reconstructed volumes

Image Sets

1. Deglycosylated SorCS2 dataset

Category:

reconstructed volumes

Image format:

MRC

No. of images or tilt series:

Image size:

(690, 344)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(10.0, 10.0)

Details:

Denoised and standard WBP tomogram

Files:

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2. SorCS2(p75/NGF) dataset

Category:

reconstructed volumes

Image format:

MRC

No. of images or tilt series:

Image size:

(690, 275)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(10.0, 10.0)

Details:

Denoised and standard WBP tomogram

Files:

This entry cannot be downloaded from PDBj.

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

3. SorCS2(PGRN) dataset

Category:

reconstructed volumes

Image format:

MRC

No. of images or tilt series:

Image size:

(690, 275)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(10.0, 10.0)

Details:

Denoised and standard WBP tomogram

Files:

This entry cannot be downloaded from PDBj.

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

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Citations

AlignPCA-2D: PCA-reduced Euclidean vector alignment for 2D classification in cryo-EM.

Ramírez-Aportela E, Zarrabeitia OL, Fonseca YC, Ceska T, Subramaniam S, Carazo JM, Sorzano COS. (2026)

A variational framework with composite sparse regularization for cryo-electron tomography reconstruction.

Yu C, Xu Z, Zeng Q, Wan X, El-Messiry H, Zhang F, Han R. (2026)

CryoFSL: an annotation-efficient, few-shot learning framework for robust protein particle picking in cryo-electron microscopy micrographs.

Poudel B, Gyawali R, Dhakal A, Cheng J, Xu D. (2026)

prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.

He L, Bartesaghi A. (2026)

CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.

Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)

Unbend, correction of local beam-induced sample motion in cryo-EM images using a 3D spline model.

Kong L, Zottig X, Elferich J, Grigorieff N. (2026)

CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

Chart builder: an interactive tool for user driven data visualization in the electron microscopy data bank.

Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)

Deep-learning methods for contrast enhancement and artifact reduction in cryo-electron tomography: a systematic analysis of the state of the art and proposed improvements.

Jones HN, Deshmukh A, Pande K. (2026)

Dual site targeting of the bacterial 70S ribosome by tetracyclines.

Devarkar SC, Lomakin IB, Wang J, Grada A, Bunick CG. (2026)

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