EMPIAR-13856 - Visualization of membrane-stabilized SorCS2 cis interactions [multiple data sets in MRC format]

EMPIAR-13856

Visualization of membrane-stabilized SorCS2 cis interactions [multiple data sets in MRC format]

Publication:

Visualization of membrane-stabilized SorCS2 <i>cis</i> interactions

Beugelink JW, Janssen BJC

Journal of structural biology: X 14 (2026)

PMID: 42568954

DOI: 10.1016/j.yjsbx.2026.100155

Related EMDB entry:

EMD-58430 EMD-58432 EMD-58434 EMD-58431 EMD-58429 EMD-58433

Deposited:

2026-07-22

Released:

2026-08-25

Last modified:

2026-08-25

Imageset size:

2.93 GB

Imageset DOI:

10.6019/EMPIAR-13856

Experimental metadata:

Download xml json

Contains:

reconstructed volumes

Image Sets

1. Deglycosylated SorCS2 dataset

Category:

reconstructed volumes

Image format:

MRC

No. of images or tilt series:

Image size:

(690, 344)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(10.0, 10.0)

Details:

Denoised and standard WBP tomogram

Files:

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2. SorCS2(p75/NGF) dataset

Category:

reconstructed volumes

Image format:

MRC

No. of images or tilt series:

Image size:

(690, 275)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(10.0, 10.0)

Details:

Denoised and standard WBP tomogram

Files:

This entry cannot be downloaded from PDBj.

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

3. SorCS2(PGRN) dataset

Category:

reconstructed volumes

Image format:

MRC

No. of images or tilt series:

Image size:

(690, 275)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(10.0, 10.0)

Details:

Denoised and standard WBP tomogram

Files:

This entry cannot be downloaded from PDBj.

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

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Citations

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Burton Smith RN, Murata K. (2026)

An unattended image-processing pipeline for on-the-fly quality assessment and 3D exploration in cryo-EM.

Marchán Torres D, Conesa P, Garcia A, Iceta M, Broche L, Gragera M, Linares R, Kwong HS, Chichón FJ, Svensson O, Arranz R, Effantin G, Kandiah E, Carazo JM, Sorzano COS. (2026)

AlignPCA-2D: PCA-reduced Euclidean vector alignment for 2D classification in cryo-EM.

Ramírez-Aportela E, Zarrabeitia OL, Fonseca YC, Ceska T, Subramaniam S, Carazo JM, Sorzano COS. (2026)

Helical reconstruction of amyloids in cryoSPARC.

Schaefer JH, O'Neill RT, Donnelly JP, Powers ET, Kelly JW, Lander GC. (2026)

A variational framework with composite sparse regularization for cryo-electron tomography reconstruction.

Yu C, Xu Z, Zeng Q, Wan X, El-Messiry H, Zhang F, Han R. (2026)

CryoFSL: an annotation-efficient, few-shot learning framework for robust protein particle picking in cryo-electron microscopy micrographs.

Poudel B, Gyawali R, Dhakal A, Cheng J, Xu D. (2026)

prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.

He L, Bartesaghi A. (2026)

CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.

Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)