EMPIAR-13417 - Ki16425-bound LPA2-ARK1 [multiple data sets in TIFF format]

EMPIAR-13417

Ki16425-bound LPA2-ARK1 [multiple data sets in TIFF format]

Publication:

A Rapid and Universal Pipeline for High-Resolution GPCR Structure Determination through In Silico Construct Optimization and de novo Protein Design

Kojima A, Kawakami K, Kobayashi N, Kobayashi K, Matsui TE, Uemoto K, Gu Y, Narita TJ, Kugawa M, Fukuda M, Kato HE

(---)

DOI: 10.64898/2026.04.02.716066

Related EMDB entry:

EMD-64542

Deposited:

2026-02-19

Released:

2026-10-01

Last modified:

2026-10-01

Imageset size:

2.20 TB

Imageset DOI:

10.6019/EMPIAR-13417

Experimental metadata:

Download xml json

Contains:

micrographs - multiframe

Image Sets

1. imageset_1

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

2762

Image size:

(5760, 4092)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(0.83, 0.83)

Details:

- Please ignore the pixel size in the header (1.00 Å/px); use 0.83 Å/px.
- Accelerating voltage: 300 kV
- Spherical aberration: 2.7 mm
- Total exposure dose: 45.7 e/A^2
- Please use "movie_gain.mrc" as a gain reference with flipping along Y for CryoSPARC

Files:

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2. imageset_2

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

7185

Image size:

(5760, 4092)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(0.83, 0.83)

Details:

- Please ignore the pixel size in the header (1.00 Å/px); use 0.83 Å/px.
- Accelerating voltage: 300 kV
- Spherical aberration: 2.7 mm
- Total exposure dose: 45.9 e/A^2
- Please use "movie_gain.mrc" as a gain reference with flipping along Y for CryoSPARC

Files:

This entry cannot be downloaded from PDBj.

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

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Citations

Post-acquisition super resolution for cryo-electron microscopy.

Burton Smith RN, Murata K. (2026)

Structural heterogeneity of CTE Type I tau filaments with an interface-shifted polymorph

Watanabe R, Lee EB. (2026)

Ligand-induced activation of RyR1 in native membranes.

Mikirtumov V, Golusik S, Huo R, Sprink T, Balyschew N, Yang W, Diebolder C, Yuan S, Kotecha A, Kudryashev M. (2026)

An unattended image-processing pipeline for on-the-fly quality assessment and 3D exploration in cryo-EM.

Marchán Torres D, Conesa P, Garcia A, Iceta M, Broche L, Gragera M, Linares R, Kwong HS, Chichón FJ, Svensson O, Arranz R, Effantin G, Kandiah E, Carazo JM, Sorzano COS. (2026)

CryoMV: Structure-Prior-Guided Modeling and Real-Particle Validation of Continuous Conformational Transitions in Cryo-EM

Li F, Dong H, Tang S, Wang X, Zhang C, Ji C, Han R, Zhang F, Wan X. (2026)

QwenCryoMarker: a universal post-processing framework for contamination-aware particle cleaning.

Sun Y, Zhao J, Xu N, Wang L, Ding W, Li M. (2026)

AlignPCA-2D: PCA-reduced Euclidean vector alignment for 2D classification in cryo-EM.

Ramírez-Aportela E, Zarrabeitia OL, Fonseca YC, Ceska T, Subramaniam S, Carazo JM, Sorzano COS. (2026)

Helical reconstruction of amyloids in cryoSPARC.

Schaefer JH, O'Neill RT, Donnelly JP, Powers ET, Kelly JW, Lander GC. (2026)

A variational framework with composite sparse regularization for cryo-electron tomography reconstruction.

Yu C, Xu Z, Zeng Q, Wan X, El-Messiry H, Zhang F, Han R. (2026)

CryoFSL: an annotation-efficient, few-shot learning framework for robust protein particle picking in cryo-electron microscopy micrographs.

Poudel B, Gyawali R, Dhakal A, Cheng J, Xu D. (2026)