EMPIAR-13210 - Cryo-EM structure of the Chromera velia PSI supercomplex at 1.84 Angstrom resolution [multiple data sets in EER format]

EMPIAR-13210

Cryo-EM structure of the Chromera velia PSI supercomplex at 1.84 Angstrom resolution [multiple data sets in EER format]

Publication:

The cryo-EM structure of Photosystem I from Chromera velia with a bound superoxide dismutase heterodimer

Yuan X, Lukeš M, Qian P, Charras Q, Smrčka T, Man P, Kovářová L, Koník P, Heilmann E, Al-Amoudi A, Sobotka R, Naschberger A

Nature communications (2025)

PMID: 41423677

DOI: 10.1038/s41467-025-67637-0

Related EMDB entry:

EMD-52518 EMD-52508 EMD-52507 EMD-52517 EMD-52501

Deposited:

2025-12-29

Released:

2026-02-03

Last modified:

2026-02-03

Imageset size:

10.46 TB

Imageset DOI:

10.6019/EMPIAR-13210

Experimental metadata:

Download xml json

Contains:

micrographs - multiframe

Image Sets

1. Unaligned multiframe micrographs of the Chromera velia PSI complex dataset 1

Category:

micrographs - multiframe

Image format:

EER

No. of images or tilt series:

20980

Image size:

(4096, 4096)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(0.729, 0.729)

Details:

---

Files:

This entry cannot be downloaded from PDBj.

Archives and downloads the selected files into an uncompressed zip file.

Depending on the number and size of files to be downloaded, this can take an enormous amount of time. Also, this feature is unstable and may not work properly, and checksums of downloaded files are not verified.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

2. Unaligned multiframe micrographs of the Chromera velia PSI complex dataset 1

Category:

micrographs - multiframe

Image format:

EER

No. of images or tilt series:

11917

Image size:

(4096, 4096)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(0.729, 0.729)

Details:

---

Files:

This entry cannot be downloaded from PDBj.

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

Browse All Files

Quick Links

Browse EMPIAR

Sample Preparation Widget

Volume Browser

Tomo Viewer Prototype

Claim entries to your ORCiD

Talks and Tutorials

EMPIAR Quick tour

Publications

Re-use study

Statistics

EMPIAR in the news

COVID-19 Data Portal

EMDB

BioImage Archive

PDBe

EMNavigator@PDBj

PDBj

Citations

CryoSift: an accessible and automated CNN-driven tool for cryo-EM 2D class selection.

Schäfer JH, Calza A, Hom K, Damodar P, Peng R, Bogdanović N, Lander GC, Stagg SM, Cianfrocco MA. (2025)

IsoNet2 determines cellular structures at submolecular resolution without averaging

--- (2026)

GTpick: A deep neural network for Cryo-EM particle detection.

Ni S, Yang C, Liu Y, Zhang Y, Shi Y, Qian A, Kong R, Chang S. (2025)

High-resolution ab initio reconstruction enables cryo-EM structure determination of small particles

Kim K, Li H, Clarke OB. (2025)

CLEM-Reg: an automated point cloud-based registration algorithm for volume correlative light and electron microscopy.

Krentzel D, Elphick M, Domart MC, Peddie CJ, Laine RF, Shand C, Henriques R, Collinson LM, Jones ML. (2025)

CryoEMNet driven symmetry-aware molecular reconstruction through deep learning enhanced electron microscopy.

Arora S, Pan SH, Kumar S, Singh SK, Chauhan U, Alhalabi W, Arya V, Alsulami BS, Hsu CH, Chui KT, Gupta BB. (2025)

PERC: a suite of software tools for the curation of cryoEM data with application to simulation, modeling and machine learning.

Costa-Gomes B, Greer J, Juraschko N, Parkhurst J, Mirecka J, Famili M, Rangel-Smith C, Strickson O, Lowe A, Basham M, Burnley T. (2025)

Comparing cryo-EM methods and molecular dynamics simulation to investigate heterogeneity in ligand-bound TRPV1.

Astore MA, Silva-Sánchez D, Blackwell R, Cossio P, Hanson SM. (2025)

DiameTR: A cryo-EM tool for diameter sorting of tubular samples.

Peng R, Elkhaligy H, Grant T, Stagg SM. (2025)

Self-supervised learning for generalizable particle picking in cryo-EM micrographs.

Zamanos A, Koromilas P, Bouritsas G, Kastritis PL, Panagakis Y. (2025)

See all citations

Protein Data Bank Japan News

[2026-02-11]

[wwPDB] New PDB Beta Archive Available for Testing

[2026-02-11]

308 new PDB entries have been released on 2026-02-11.

[2026-01-20]

[wwPDB] EMDB Surpasses 10,000 Entries in a Year

[2026-01-13]

[wwPDB] wwPDB Shared Responsibilities on Data Processing

[2026-01-08]

[wwPDB] Time-stamped Copies of PDB and EMDB Archives

[2025-12-17]

[wwPDB] 20,000 Structures Deposited to the PDB in 2025

[2025-12-04]

[wwPDB] Biocurator Milestone: >10,000 Depositions Processed

[2025-11-19]

[wwPDB] Coming soon: wwPDB Data Processing Distribution Changes

[2025-10-30]

[wwPDB] Coming Soon: Remediation of Metalloprotein-containing PDB Entries and CCDs

[2025-09-26]

[wwPDB] Introducing the first 3DEM Model-Map percentile slider to the wwPDB validation report

See all news