EMPIAR-13068 - Common beta cytokine complex micrographs [multiple data sets in TIFF format]

EMPIAR-13068

Common beta cytokine complex micrographs [multiple data sets in TIFF format]

Publication:

Structure of the interleukin-5 receptor complex exemplifies the organizing principle of common beta cytokine signaling

Caveney NA, Rodriguez GE, Pollmann C, Meyer T, Borowska MT, Wilson SC, Wang N, Xiang X, Householder KD, Tao P, Su LL, Saxton RA, Piehler J, Garcia KC

Molecular cell 84 (2024) 1995-20050000000.0

PMID: 38614096

DOI: 10.1016/j.molcel.2024.03.023

Related EMDB entry:

EMD-41367 EMD-41368 EMD-41369

Deposited:

2025-10-21

Released:

2025-12-22

Last modified:

2025-12-22

Imageset size:

9.34 TB

Imageset DOI:

10.6019/EMPIAR-13068

Experimental metadata:

Download xml json

Contains:

micrographs - multiframe

Image Sets

1. GM-CSF Complex Movies - Glacios

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

Image size:

(None, None)

Pixel type:

SIGNED BYTE

Pixel spacing:

(0.9273, 0.9273)

Details:

GM-CSF Complex Movies - Glacios - 0.9273 A/pix, 58.8e/A2 dose. Micrographs in .tiff format, corresponding .mrc gain in folder.

Files:

This entry cannot be downloaded from PDBj.

Archives and downloads the selected files into an uncompressed zip file.

Depending on the number and size of files to be downloaded, this can take an enormous amount of time. Also, this feature is unstable and may not work properly, and checksums of downloaded files are not verified.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

2. IL-5 Complex Movies - Glacios

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

Image size:

(None, None)

Pixel type:

SIGNED BYTE

Pixel spacing:

(0.9273, 0.9273)

Details:

IL-5 Complex Movies - Glacios - 0.9273 A/pix, 58.8e/A2 dose. Micrographs in .tiff format, corresponding .mrc gain in folder.

Files:

This entry cannot be downloaded from PDBj.

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

3. IL-5 Complex Movies - Krios

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

Image size:

(None, None)

Pixel type:

SIGNED BYTE

Pixel spacing:

(0.653, 0.653)

Details:

IL-5 Complex Movies - Krios - 0.653 A/pix, 59.9e/A2 dose. Micrographs in .tiff format, corresponding .mrc gain in folder.

Files:

This entry cannot be downloaded from PDBj.

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

4. IL-3 Complex Movies - Glacios

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

Image size:

(None, None)

Pixel type:

SIGNED BYTE

Pixel spacing:

(0.9273, 0.9273)

Details:

IL-5 Complex Movies - Glacios - 0.9273 A/pix, 58.8e/A2 dose. Micrographs in .tiff format, corresponding .mrc gain in folder.

Files:

This entry cannot be downloaded from PDBj.

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

Browse All Files

Quick Links

Browse EMPIAR

Sample Preparation Widget

Volume Browser

Tomo Viewer Prototype

Claim entries to your ORCiD

Talks and Tutorials

EMPIAR Quick tour

Publications

Re-use study

Statistics

EMPIAR in the news

COVID-19 Data Portal

EMDB

BioImage Archive

PDBe

EMNavigator@PDBj

PDBj

Citations

GTpick: A deep neural network for Cryo-EM particle detection.

Ni S, Yang C, Liu Y, Zhang Y, Shi Y, Qian A, Kong R, Chang S. (2025)

High-resolution ab initio reconstruction enables cryo-EM structure determination of small particles

Kim K, Li H, Clarke OB. (2025)

CLEM-Reg: an automated point cloud-based registration algorithm for volume correlative light and electron microscopy.

Krentzel D, Elphick M, Domart MC, Peddie CJ, Laine RF, Shand C, Henriques R, Collinson LM, Jones ML. (2025)

CryoEMNet driven symmetry-aware molecular reconstruction through deep learning enhanced electron microscopy.

Arora S, Pan SH, Kumar S, Singh SK, Chauhan U, Alhalabi W, Arya V, Alsulami BS, Hsu CH, Chui KT, Gupta BB. (2025)

PERC: a suite of software tools for the curation of cryoEM data with application to simulation, modeling and machine learning.

Costa-Gomes B, Greer J, Juraschko N, Parkhurst J, Mirecka J, Famili M, Rangel-Smith C, Strickson O, Lowe A, Basham M, Burnley T. (2025)

DiameTR: A cryo-EM tool for diameter sorting of tubular samples.

Peng R, Elkhaligy H, Grant T, Stagg SM. (2025)

Self-supervised learning for generalizable particle picking in cryo-EM micrographs.

Zamanos A, Koromilas P, Bouritsas G, Kastritis PL, Panagakis Y. (2025)

Localization of macromolecules in crowded cellular cryo-electron tomograms from extremely sparse labels.

Uddin MR, Ahmed AY, Tabib HMS, Tahmid MT, Alam MZU, Freyberg Z, Xu M. (2025)

Structural insight into bicarbonate-mediated carboxylation by human vitamin K-dependent carboxylase.

Wu K, Wang Z, Yao D, Li S, Wang X, Zhang Y, Cao M, Shen Y, Xing S, Wu J, Lei M, Lan P. (2025)

Conserved hydrophilic checkpoints tune FocA-mediated formate:H<sup>+</sup> symport.

Tüting C, Janson K, Kammel M, Ihling C, Lorenz J, Kyrilis FL, Hamdi F, Erdmann C, Sinz A, Sawers RG, Kastritis PL. (2025)

See all citations

Protein Data Bank Japan News

[2026-01-14]

503 new PDB entries have been released on 2026-01-14.

[2026-01-13]

[wwPDB] wwPDB Shared Responsibilities on Data Processing

[2026-01-08]

[wwPDB] Time-stamped Copies of PDB and EMDB Archives

[2025-12-17]

[wwPDB] 20,000 Structures Deposited to the PDB in 2025

[2025-12-04]

[wwPDB] Biocurator Milestone: >10,000 Depositions Processed

[2025-11-19]

[wwPDB] Coming soon: wwPDB Data Processing Distribution Changes

[2025-10-30]

[wwPDB] Coming Soon: Remediation of Metalloprotein-containing PDB Entries and CCDs

[2025-09-26]

[wwPDB] Introducing the first 3DEM Model-Map percentile slider to the wwPDB validation report

[2025-07-17]

[wwPDB] Transitioning to PDBx/mmCIF and Extended PDB IDs

[2025-06-25]

[wwPDB] Extension to EMDB Accession Codes

See all news