EMPIAR-13054 - Single particle reconstruction of LGTV TP21 strain [7111 multi-frame micrographs composed of 40 frames each in MRC format]

EMPIAR-13054

Single particle reconstruction of LGTV TP21 strain [7111 multi-frame micrographs composed of 40 frames each in MRC format]

Publication:

Influence of the pre-membrane and envelope proteins on structure, pathogenicity, and tropism of tick-borne encephalitis virus

Rosendal E, Bisikalo K, Willekens SMA, Lindgren M, Holoubek J, Svoboda P, Lappalainen A, Könighofer E, Mirgorodskaya E, Nordén R, Morini F, Rosenbaum W, Růžek D, Ahlgren U, Anastasina M, Merits A, Butcher SJ, Nilsson E, Överby AK

Journal of virology 99 (2025)

PMID: 40827915

DOI: 10.1128/jvi.00870-25

Related EMDB entry:

EMD-50624

Deposited:

2025-10-13

Released:

2025-10-20

Last modified:

2025-10-20

Imageset size:

4.04 TB

Imageset DOI:

10.6019/EMPIAR-13054

Experimental metadata:

Download xml json

Compressed by PDBj:

Image formats and pixel types shown below are those of the original, non-compressed files.

--- file not found ---

Contains:

micrographs - multiframe

Image Sets

1. Unaligned movies of the purified LGTV TP21 strain

Category:

micrographs - multiframe

Image format:

MRC

No. of images or tilt series:

7111

Image size:

(4096, 4096)

Pixel type:

SIGNED 16 BIT INTEGER

Pixel spacing:

(0.96, 0.96)

Details:

Micrographs collected of a Talos Arctica 200 keV, equipped with a Falcon 3. Spherical aberration 2.7, total dose 40. Most particles come from the smallest datset, labelled "set_airfuge"

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Citations

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CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

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Jones HN, Deshmukh A, Pande K. (2026)

CryoGS: High-Quality Cryo-EM Homogeneous Reconstruction by Gaussian Splatting

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Point cloud deformation modeling for particle selection following cryo-EM 2D classification.

Wang X, Mo Z, Li F, Zhang F, Wan X. (2026)

ICECREAM: high-fidelity equivariant cryo-electron tomography.

Kishore V, Debarnot V, Righetto RD, Engel BD, Dokmanić I. (2026)