EMPIAR-12959 - CryoEM structure of human LARGE1 bound to UDP-GlcA [8074 multi-frame micrographs composed of 50 frames each in TIFF format]

EMPIAR-12959

CryoEM structure of human LARGE1 bound to UDP-GlcA [8074 multi-frame micrographs composed of 50 frames each in TIFF format]

Publication:

LARGE1 processively polymerizes length-controlled matriglycan on prodystroglycan

Joesph SJ, Schnicker N, Xu Z, Yan R, Yu Z, Davulcu O, Yang T, Hopkins J, Anderson M, Venzke D, Joseph S, Schnicker NJ, Spellmon N, Xu Z, Yan R, Yu Z, Davulcu O, Yang T, Hopkins J, Venzke D, Campbell KP

Nature communications 16 (2025)

PMID: 41073435

DOI: 10.1038/s41467-025-64080-z

Related EMDB entry:

EMD-47420

Deposited:

2024-09-19

Released:

2025-10-26

Last modified:

2025-10-26

Imageset size:

3.44 TB

Imageset DOI:

10.6019/EMPIAR-12959

Experimental metadata:

Download xml json

Contains:

micrographs - multiframe

Image Sets

1. Unaligned multi-frame micrographs of LARGE1 bound to UDP-GlcA

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

8074

Image size:

(11520, 8184)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(0.4135, 0.4135)

Details:

---

Files:

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Citations

AlignPCA-2D: PCA-reduced Euclidean vector alignment for 2D classification in cryo-EM.

Ramírez-Aportela E, Zarrabeitia OL, Fonseca YC, Ceska T, Subramaniam S, Carazo JM, Sorzano COS. (2026)

A variational framework with composite sparse regularization for cryo-electron tomography reconstruction.

Yu C, Xu Z, Zeng Q, Wan X, El-Messiry H, Zhang F, Han R. (2026)

Helical reconstruction of amyloids in cryoSPARC.

Schaefer JH, O'Neill RT, Donnelly JP, Powers ET, Kelly JW, Lander GC. (2026)

An unattended image-processing pipeline for on-the-fly quality assessment and 3D exploration in cryo-EM.

Marchán Torres D, Conesa P, Garcia A, Iceta M, Broche L, Gragera M, Linares R, Kwong HS, Chichón FJ, Svensson O, Arranz R, Effantin G, Kandiah E, Carazo JM, Sorzano COS. (2026)

CryoFSL: an annotation-efficient, few-shot learning framework for robust protein particle picking in cryo-electron microscopy micrographs.

Poudel B, Gyawali R, Dhakal A, Cheng J, Xu D. (2026)

prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.

He L, Bartesaghi A. (2026)

CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.

Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)

Unbend, correction of local beam-induced sample motion in cryo-EM images using a 3D spline model.

Kong L, Zottig X, Elferich J, Grigorieff N. (2026)

CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

Chart builder: an interactive tool for user driven data visualization in the electron microscopy data bank.

Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)

See all citations

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